Variant report

Variant	rs7102366
Chromosome Location	chr11:26101772-26101773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10734369	0.86[ASN][1000 genomes]
rs10734371	0.86[ASN][1000 genomes]
rs10742133	0.86[ASN][1000 genomes]
rs10767505	0.91[ASN][1000 genomes]
rs10767515	0.95[ASN][1000 genomes]
rs10834915	0.94[EUR][1000 genomes]
rs11029135	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1489501	0.91[ASN][1000 genomes]
rs1489502	0.91[ASN][1000 genomes]
rs1552582	1.00[ASN][1000 genomes]
rs1586607	0.86[ASN][1000 genomes]
rs3114689	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7131491	1.00[ASN][1000 genomes]
rs7927402	0.86[ASN][1000 genomes]
rs7927514	0.86[ASN][1000 genomes]
rs7942563	0.86[ASN][1000 genomes]
rs7948850	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26096600-26102000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:26100200-26101800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:26100400-26102200	Enhancers	NHEK	skin
4	chr11:26100400-26102400	Enhancers	Hela-S3	cervix
5	chr11:26101200-26102400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:26101400-26102200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:26101600-26102000	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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