Variant report

Variant	rs7948850
Chromosome Location	chr11:26107411-26107412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10734372	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11029135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029193	0.81[AMR][1000 genomes]
rs11029202	0.81[AMR][1000 genomes]
rs1387500	0.81[AMR][1000 genomes]
rs1387501	0.81[AMR][1000 genomes]
rs1489503	0.81[AMR][1000 genomes]
rs1489504	0.81[AMR][1000 genomes]
rs1489507	0.81[AMR][1000 genomes]
rs3103401	0.81[AMR][1000 genomes]
rs3114678	0.81[AMR][1000 genomes]
rs3114680	0.81[AMR][1000 genomes]
rs3114689	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484195	0.81[AMR][1000 genomes]
rs7102366	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7930886	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv972917	chr11:26104722-26110818	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26102200-26109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:26106200-26108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:26106800-26109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:26107000-26108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:26107200-26108800	Enhancers	Primary B cells from cord blood	blood
8	chr11:26107400-26107600	Enhancers	GM12878-XiMat	blood
9	chr11:26107400-26108800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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