Variant report

Variant	rs1387500
Chromosome Location	chr11:26119371-26119372
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10734372	1.00[AMR][1000 genomes]
rs11029135	0.81[AMR][1000 genomes]
rs11029193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029251	1.00[EUR][1000 genomes]
rs12288869	1.00[EUR][1000 genomes]
rs12290663	1.00[EUR][1000 genomes]
rs1387501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1489503	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1489504	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1489507	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3103401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3114678	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3114680	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3114689	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484195	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930886	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948850	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26117600-26120000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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