Variant report

Variant	rs12288869
Chromosome Location	chr11:26161985-26161986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10834915	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11029193	1.00[EUR][1000 genomes]
rs11029202	1.00[EUR][1000 genomes]
rs11029251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290663	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387500	1.00[EUR][1000 genomes]
rs1387501	1.00[EUR][1000 genomes]
rs1489504	1.00[EUR][1000 genomes]
rs1489507	1.00[EUR][1000 genomes]
rs3103401	1.00[EUR][1000 genomes]
rs3114678	1.00[EUR][1000 genomes]
rs3114680	1.00[EUR][1000 genomes]
rs3114689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26160400-26165000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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