Variant report

Variant	rs1489509
Chromosome Location	chr11:26111251-26111252
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10501037	1.00[ASN][1000 genomes]
rs10734366	1.00[CHB][hapmap]
rs10742127	1.00[CHB][hapmap]
rs10742128	1.00[CHB][hapmap]
rs10834897	1.00[CHB][hapmap]
rs10834898	1.00[CHB][hapmap]
rs11029114	1.00[CHB][hapmap]
rs11029120	0.82[ASN][1000 genomes]
rs11029127	1.00[ASN][1000 genomes]
rs11029128	1.00[ASN][1000 genomes]
rs11029130	1.00[ASN][1000 genomes]
rs11029132	1.00[ASN][1000 genomes]
rs11029133	1.00[ASN][1000 genomes]
rs11029136	1.00[ASN][1000 genomes]
rs11029137	1.00[ASN][1000 genomes]
rs11029138	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029139	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029140	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11029144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029147	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029154	1.00[ASN][1000 genomes]
rs11029155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029157	1.00[ASN][1000 genomes]
rs11029158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029159	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029162	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029165	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029166	1.00[ASN][1000 genomes]
rs11029167	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029172	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029177	1.00[ASN][1000 genomes]
rs11029178	1.00[ASN][1000 genomes]
rs11029183	1.00[ASN][1000 genomes]
rs11029184	1.00[ASN][1000 genomes]
rs11029185	1.00[ASN][1000 genomes]
rs11029188	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029189	1.00[ASN][1000 genomes]
rs11029190	1.00[ASN][1000 genomes]
rs11029191	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029192	1.00[ASN][1000 genomes]
rs11029194	1.00[ASN][1000 genomes]
rs11029195	1.00[ASN][1000 genomes]
rs11029196	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029197	1.00[ASN][1000 genomes]
rs11029198	1.00[ASN][1000 genomes]
rs11029199	1.00[ASN][1000 genomes]
rs11029200	1.00[ASN][1000 genomes]
rs11029201	1.00[ASN][1000 genomes]
rs11029203	1.00[ASN][1000 genomes]
rs11029204	1.00[ASN][1000 genomes]
rs11029205	1.00[ASN][1000 genomes]
rs11029210	1.00[ASN][1000 genomes]
rs11029243	0.82[ASN][1000 genomes]
rs11029244	0.82[ASN][1000 genomes]
rs12222395	0.82[ASN][1000 genomes]
rs12222406	0.82[ASN][1000 genomes]
rs12223917	0.82[ASN][1000 genomes]
rs12224552	1.00[ASN][1000 genomes]
rs12225865	1.00[CHB][hapmap]
rs1387490	1.00[ASN][1000 genomes]
rs1387491	1.00[ASN][1000 genomes]
rs1387492	1.00[ASN][1000 genomes]
rs1387503	1.00[CHB][hapmap]
rs1387507	1.00[CHB][hapmap]
rs1489508	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349610	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2349611	1.00[ASN][1000 genomes]
rs3926027	0.85[EUR][1000 genomes]
rs4360660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59456245	1.00[ASN][1000 genomes]
rs61688636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484193	1.00[CHB][hapmap]
rs66633054	1.00[ASN][1000 genomes]
rs66648383	1.00[ASN][1000 genomes]
rs66699863	1.00[ASN][1000 genomes]
rs7101817	1.00[CHB][hapmap]
rs7105188	1.00[CHB][hapmap]
rs7105339	1.00[CHB][hapmap]
rs7115939	1.00[CHB][hapmap]
rs7116083	1.00[CHB][hapmap]
rs7119696	1.00[CHB][hapmap]
rs7123678	1.00[CHB][hapmap]
rs72885762	1.00[ASN][1000 genomes]
rs73435407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435414	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435415	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435418	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435502	1.00[ASN][1000 genomes]
rs7935278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633820	1.00[ASN][1000 genomes]
rs9633821	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633854	1.00[ASN][1000 genomes]
rs9633855	1.00[ASN][1000 genomes]
rs977800	1.00[ASN][1000 genomes]
rs988513	1.00[CHB][hapmap]
rs988514	1.00[CHB][hapmap]
rs988516	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:26109200-26111800	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:26109400-26111400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:26110400-26112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:26110800-26112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:26111200-26115400	Weak transcription	Primary B cells from cord blood	blood

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