Variant report

Variant	rs12223415
Chromosome Location	chr11:26260838-26260839
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10834914	1.00[AMR][1000 genomes]
rs10834930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10834931	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029136	1.00[AMR][1000 genomes]
rs11029177	1.00[AMR][1000 genomes]
rs11029192	1.00[AMR][1000 genomes]
rs11029194	1.00[AMR][1000 genomes]
rs11029195	1.00[AMR][1000 genomes]
rs11029197	1.00[AMR][1000 genomes]
rs11029198	1.00[AMR][1000 genomes]
rs11029200	1.00[AMR][1000 genomes]
rs11029201	1.00[AMR][1000 genomes]
rs11029203	1.00[AMR][1000 genomes]
rs11029205	1.00[AMR][1000 genomes]
rs11029210	1.00[AMR][1000 genomes]
rs11029243	1.00[AMR][1000 genomes]
rs11029244	1.00[AMR][1000 genomes]
rs11029249	1.00[AMR][1000 genomes]
rs11029250	1.00[AMR][1000 genomes]
rs11029252	1.00[AMR][1000 genomes]
rs11029254	1.00[AMR][1000 genomes]
rs11029255	1.00[AMR][1000 genomes]
rs11029258	1.00[AMR][1000 genomes]
rs11029259	1.00[AMR][1000 genomes]
rs11029260	1.00[AMR][1000 genomes]
rs11029261	1.00[AMR][1000 genomes]
rs11029262	1.00[AMR][1000 genomes]
rs11029263	1.00[AMR][1000 genomes]
rs11029264	1.00[AMR][1000 genomes]
rs11029287	1.00[AMR][1000 genomes]
rs11029288	1.00[AMR][1000 genomes]
rs11029289	1.00[AMR][1000 genomes]
rs11029290	1.00[AMR][1000 genomes]
rs11029291	1.00[AMR][1000 genomes]
rs11029292	1.00[AMR][1000 genomes]
rs11029293	1.00[AMR][1000 genomes]
rs11029294	1.00[AMR][1000 genomes]
rs11029295	1.00[AMR][1000 genomes]
rs11029297	1.00[AMR][1000 genomes]
rs11029298	1.00[AMR][1000 genomes]
rs11029356	1.00[AMR][1000 genomes]
rs11029357	1.00[AMR][1000 genomes]
rs11029358	1.00[AMR][1000 genomes]
rs11029359	1.00[AMR][1000 genomes]
rs11029360	1.00[AMR][1000 genomes]
rs11029361	1.00[AMR][1000 genomes]
rs11029362	1.00[AMR][1000 genomes]
rs11029363	1.00[AMR][1000 genomes]
rs11029364	1.00[AMR][1000 genomes]
rs11029365	1.00[AMR][1000 genomes]
rs11029366	1.00[AMR][1000 genomes]
rs11029367	1.00[AMR][1000 genomes]
rs11029369	1.00[AMR][1000 genomes]
rs11029370	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs11029371	1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs11029391	1.00[AMR][1000 genomes]
rs11029395	1.00[AMR][1000 genomes]
rs11029396	1.00[AMR][1000 genomes]
rs11029397	1.00[AMR][1000 genomes]
rs11029400	1.00[AMR][1000 genomes]
rs11029401	1.00[AMR][1000 genomes]
rs11029404	1.00[AMR][1000 genomes]
rs11029407	1.00[AMR][1000 genomes]
rs11029408	1.00[AMR][1000 genomes]
rs11029413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029424	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029427	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029428	0.96[ASN][1000 genomes]
rs11029430	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029432	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029433	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029435	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029436	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029437	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029438	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029439	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029441	0.94[ASN][1000 genomes]
rs11029442	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029443	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029444	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029445	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029483	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11029484	0.85[CHB][hapmap]
rs11029519	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11029522	0.85[CHB][hapmap]
rs12049868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221722	1.00[AMR][1000 genomes]
rs12222020	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222176	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222393	1.00[AMR][1000 genomes]
rs12222395	1.00[AMR][1000 genomes]
rs12222406	1.00[AMR][1000 genomes]
rs12222558	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222973	1.00[AMR][1000 genomes]
rs12223000	1.00[AMR][1000 genomes]
rs12223107	1.00[AMR][1000 genomes]
rs12223119	1.00[AMR][1000 genomes]
rs12223130	1.00[AMR][1000 genomes]
rs12223211	1.00[AMR][1000 genomes]
rs12223393	1.00[AMR][1000 genomes]
rs12223862	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12223917	1.00[AMR][1000 genomes]
rs12224620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224848	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12225078	1.00[AMR][1000 genomes]
rs12225190	1.00[AMR][1000 genomes]
rs12225290	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12225305	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12225764	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34265487	1.00[AMR][1000 genomes]
rs36087416	1.00[AMR][1000 genomes]
rs55665111	0.80[ASN][1000 genomes]
rs59898647	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60724653	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60835780	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9633855	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3371500	chr11:26257976-26261674	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26260800-26261000	Enhancers	Pancreatic Islets	Pancreatic Islet

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