Variant report
| Variant | rs55665111 |
|---|---|
| Chromosome Location | chr11:26281056-26281057 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11029417 | 0.80[ASN][1000 genomes] |
| rs11029418 | 0.80[ASN][1000 genomes] |
| rs11029419 | 0.80[ASN][1000 genomes] |
| rs11029424 | 0.82[ASN][1000 genomes] |
| rs11029427 | 0.80[ASN][1000 genomes] |
| rs11029428 | 0.80[ASN][1000 genomes] |
| rs11029430 | 0.80[ASN][1000 genomes] |
| rs11029432 | 0.80[ASN][1000 genomes] |
| rs11029433 | 0.80[ASN][1000 genomes] |
| rs11029436 | 0.80[ASN][1000 genomes] |
| rs11029437 | 0.80[ASN][1000 genomes] |
| rs11029438 | 0.80[ASN][1000 genomes] |
| rs11029439 | 0.82[ASN][1000 genomes] |
| rs11029441 | 0.81[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11029442 | 0.82[ASN][1000 genomes] |
| rs11029443 | 0.82[ASN][1000 genomes] |
| rs11029444 | 0.82[ASN][1000 genomes] |
| rs11029445 | 0.82[ASN][1000 genomes] |
| rs12222020 | 0.80[ASN][1000 genomes] |
| rs12222176 | 0.82[ASN][1000 genomes] |
| rs12222558 | 0.82[ASN][1000 genomes] |
| rs12222677 | 0.80[ASN][1000 genomes] |
| rs12223415 | 0.80[ASN][1000 genomes] |
| rs12223862 | 0.82[ASN][1000 genomes] |
| rs12224620 | 0.80[ASN][1000 genomes] |
| rs12224848 | 0.82[ASN][1000 genomes] |
| rs12225290 | 0.82[ASN][1000 genomes] |
| rs12225305 | 0.82[ASN][1000 genomes] |
| rs12225764 | 0.80[ASN][1000 genomes] |
| rs1381187 | 0.80[AFR][1000 genomes] |
| rs59898647 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832094 | chr11:26130733-26292782 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26275800-26290600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
