Variant report

Variant	rs12223862
Chromosome Location	chr11:26271032-26271033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10834930	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834931	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029370	1.00[CHB][hapmap]
rs11029371	1.00[CHB][hapmap]
rs11029413	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11029415	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11029416	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11029417	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029418	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029419	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029420	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029428	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029430	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029432	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029433	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029435	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029436	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029437	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029438	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029439	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029441	0.96[ASN][1000 genomes]
rs11029442	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029443	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029444	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029445	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029483	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs11029484	0.84[JPT][hapmap]
rs11029519	1.00[CEU][hapmap]
rs12049868	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222020	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222176	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222558	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222677	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12223415	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12224620	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12224848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225290	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225764	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55665111	0.82[ASN][1000 genomes]
rs59898647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60724653	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60835780	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26267200-26275200	Weak transcription	NHLF	lung
2	chr11:26268400-26274600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:26269000-26272200	Weak transcription	NHDF-Ad	bronchial
4	chr11:26270400-26272400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:26270600-26273000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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