Variant report

Variant	rs12223130
Chromosome Location	chr11:26255028-26255029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10834914	1.00[AMR][1000 genomes]
rs10834930	1.00[AMR][1000 genomes]
rs10834931	1.00[AMR][1000 genomes]
rs11029136	1.00[AMR][1000 genomes]
rs11029177	1.00[AMR][1000 genomes]
rs11029192	1.00[AMR][1000 genomes]
rs11029194	1.00[AMR][1000 genomes]
rs11029195	1.00[AMR][1000 genomes]
rs11029197	1.00[AMR][1000 genomes]
rs11029198	1.00[AMR][1000 genomes]
rs11029200	1.00[AMR][1000 genomes]
rs11029201	1.00[AMR][1000 genomes]
rs11029203	1.00[AMR][1000 genomes]
rs11029205	1.00[AMR][1000 genomes]
rs11029210	1.00[AMR][1000 genomes]
rs11029243	1.00[AMR][1000 genomes]
rs11029244	1.00[AMR][1000 genomes]
rs11029249	1.00[AMR][1000 genomes]
rs11029250	1.00[AMR][1000 genomes]
rs11029252	1.00[AMR][1000 genomes]
rs11029254	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11029255	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11029258	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029259	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029260	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11029261	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029262	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029263	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029264	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029287	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029288	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029289	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029290	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029291	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029292	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029293	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029294	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029295	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029297	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029298	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029355	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029356	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11029357	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029358	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029359	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029360	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029361	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029362	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029363	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029364	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029365	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029366	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029367	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029368	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029369	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029370	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11029371	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11029391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029395	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029397	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029413	1.00[AMR][1000 genomes]
rs11029415	1.00[AMR][1000 genomes]
rs11029416	1.00[AMR][1000 genomes]
rs11029417	1.00[AMR][1000 genomes]
rs11029418	1.00[AMR][1000 genomes]
rs11029419	1.00[AMR][1000 genomes]
rs11029420	1.00[AMR][1000 genomes]
rs12049868	1.00[AMR][1000 genomes]
rs12221722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222393	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12222395	1.00[AMR][1000 genomes]
rs12222406	1.00[AMR][1000 genomes]
rs12222677	1.00[AMR][1000 genomes]
rs12222973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223000	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12223107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223211	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12223393	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12223415	1.00[AMR][1000 genomes]
rs12223917	1.00[AMR][1000 genomes]
rs12224620	1.00[AMR][1000 genomes]
rs12225078	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12225190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34265487	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36087416	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9633855	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26250200-26256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26251800-26259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:26252800-26255600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:26253400-26256000	Weak transcription	Hela-S3	cervix
5	chr11:26253800-26255600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:26253800-26255800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:26253800-26256000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:26254000-26255800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:26254000-26255800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:26254000-26255800	Weak transcription	HUVEC	blood vessel
11	chr11:26254000-26255800	Weak transcription	NHEK	skin
12	chr11:26254000-26256000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:26254000-26256000	Weak transcription	NHDF-Ad	bronchial
14	chr11:26254000-26256200	Weak transcription	HMEC	breast

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