Variant report

Variant	rs12226069
Chromosome Location	chr11:8539069-8539070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11041939	0.81[ASN][1000 genomes]
rs11041943	0.81[ASN][1000 genomes]
rs11041949	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11041955	0.96[ASN][1000 genomes]
rs11041960	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12576961	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2311390	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7105027	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7119274	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73405938	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7950041	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8538800-8539400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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