Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1011858	0.81[AMR][1000 genomes]
rs10840032	0.81[JPT][hapmap]
rs10840037	0.80[JPT][hapmap]
rs11041916	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11041917	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11041925	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11041927	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11041943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041955	0.84[ASN][1000 genomes]
rs11041966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041996	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11042000	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12224971	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12226069	0.81[ASN][1000 genomes]
rs12363733	0.82[AMR][1000 genomes]
rs12576961	0.85[ASN][1000 genomes]
rs1992756	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2028881	0.94[CHB][hapmap]
rs2311390	0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs4586148	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs7105027	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7119274	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs73405938	0.85[ASN][1000 genomes]
rs7939568	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8464600-8495800	Weak transcription	Fetal Heart	heart
2	chr11:8474200-8491400	Weak transcription	Pancreas	Pancrea
3	chr11:8488200-8491600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:8488200-8492600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:8489000-8491400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr11:8490000-8491400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:8490000-8497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:8490000-8497600	Weak transcription	Ovary	ovary
9	chr11:8491000-8492400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:8491200-8492600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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