Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10769933	0.84[CHD][hapmap]
rs10840032	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10840037	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10840096	0.84[CHD][hapmap]
rs11041927	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11041939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11041943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11041955	0.84[ASN][1000 genomes]
rs11041960	0.85[ASN][1000 genomes]
rs11042003	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11042014	0.81[CHD][hapmap]
rs12224971	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12576961	0.84[ASN][1000 genomes]
rs1992756	0.94[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs2028881	0.94[CHB][hapmap]
rs2311390	0.94[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4586148	0.94[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs7105027	0.94[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7119274	0.87[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs73405938	0.84[ASN][1000 genomes]
rs7939568	0.81[JPT][hapmap]
rs7950041	0.85[ASN][1000 genomes]
rs9633894	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11041966	STK33	cis	cerebellum	SCAN
rs11041966	OR2D2	cis	parietal	SCAN
rs11041966	STK33	cis	parietal	SCAN
rs11041966	OR52W1	cis	parietal	SCAN
rs11041966	DNHD1	cis	cerebellum	SCAN
rs11041966	APBB1	cis	parietal	SCAN
rs11041966	C11orf17	cis	cerebellum	SCAN
rs11041966	LYVE1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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