Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11041927	0.88[CHB][hapmap]
rs11041939	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs11041943	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs11041949	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11041955	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11041960	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041966	0.94[CHB][hapmap]
rs11041982	0.92[YRI][hapmap]
rs11820339	0.81[CEU][hapmap]
rs12224971	0.88[CHB][hapmap]
rs12226069	0.96[ASN][1000 genomes]
rs12576961	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12806736	1.00[YRI][hapmap]
rs1446464	0.87[YRI][hapmap]
rs1992756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2311390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4586148	0.88[CHB][hapmap]
rs4758067	0.87[YRI][hapmap]
rs7105027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119274	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126013	0.80[AFR][1000 genomes]
rs7126934	0.80[YRI][hapmap]
rs73405938	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931604	0.84[YRI][hapmap]
rs7950041	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2028881	STK33	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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