Variant report

Variant	rs4586148
Chromosome Location	chr11:8430938-8430939
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1011858	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840032	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs10840033	0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10840037	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10840041	0.83[ASN][1000 genomes]
rs11041894	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041895	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041896	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041898	0.91[ASN][1000 genomes]
rs11041899	0.91[ASN][1000 genomes]
rs11041904	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11041912	0.83[ASN][1000 genomes]
rs11041913	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11041916	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041917	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041925	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11041927	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11041939	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs11041943	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs11041966	0.94[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs12222273	0.83[ASN][1000 genomes]
rs12224971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12226334	0.98[ASN][1000 genomes]
rs12284461	0.83[ASN][1000 genomes]
rs12576010	0.83[ASN][1000 genomes]
rs12576952	0.83[ASN][1000 genomes]
rs1992756	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs2028881	0.88[CHB][hapmap]
rs2168102	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2311390	0.88[CHB][hapmap]
rs59645839	0.83[ASN][1000 genomes]
rs7105027	0.87[CHB][hapmap]
rs7119274	0.81[CHB][hapmap]
rs7929310	0.83[ASN][1000 genomes]
rs7939568	0.82[CHB][hapmap];0.89[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8426600-8447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:8429200-8431200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:8429600-8451200	Weak transcription	Fetal Heart	heart
4	chr11:8429800-8431000	Enhancers	Brain Hippocampus Middle	brain
5	chr11:8430200-8431000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:8430200-8431000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr11:8430400-8431000	Enhancers	Brain Substantia Nigra	brain
8	chr11:8430400-8431200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr11:8430600-8436400	Weak transcription	Left Ventricle	heart

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