Variant report

Variant	rs1011858
Chromosome Location	chr11:8411535-8411536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8410429..8412576-chr11:8424308..8426564,3	K562	blood:
2	chr11:8410697..8412576-chr11:8424308..8425820,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10840032	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs10840033	0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10840037	0.83[ASN][1000 genomes]
rs10840041	0.83[ASN][1000 genomes]
rs11041894	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041895	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041896	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041898	0.92[ASN][1000 genomes]
rs11041899	0.92[ASN][1000 genomes]
rs11041904	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11041912	0.83[ASN][1000 genomes]
rs11041913	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041916	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041917	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11041925	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11041927	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11041939	0.93[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs11041943	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs11041966	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs12222273	0.83[ASN][1000 genomes]
rs12224971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12226334	0.98[ASN][1000 genomes]
rs12284461	0.83[ASN][1000 genomes]
rs12576010	0.83[ASN][1000 genomes]
rs12576952	0.83[ASN][1000 genomes]
rs1992756	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs2028881	0.88[CHB][hapmap]
rs2168102	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2311390	0.88[CHB][hapmap]
rs4586148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59645839	0.83[ASN][1000 genomes]
rs7105027	0.87[CHB][hapmap]
rs7119274	0.81[CHB][hapmap]
rs7929310	0.83[ASN][1000 genomes]
rs7939568	0.82[CHB][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8407600-8411600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:8407600-8414200	Enhancers	Fetal Heart	heart
3	chr11:8408200-8415600	Enhancers	Fetal Lung	lung
4	chr11:8409800-8412200	Enhancers	Fetal Stomach	stomach
5	chr11:8410200-8411600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:8410200-8411600	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:8410200-8412000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:8410400-8411600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:8410400-8411800	Enhancers	Rectal Smooth Muscle	rectum
10	chr11:8410400-8412000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:8410400-8412000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8410400-8412000	Enhancers	Brain Germinal Matrix	brain
13	chr11:8410600-8411600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:8410600-8411600	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr11:8410600-8411800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:8410600-8411800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:8410600-8411800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:8410600-8412000	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr11:8410600-8412000	Enhancers	Fetal Muscle Leg	muscle
20	chr11:8410600-8412000	Enhancers	Lung	lung
21	chr11:8410800-8411600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:8410800-8411600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:8410800-8411600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr11:8410800-8411600	Enhancers	NHEK	skin
25	chr11:8410800-8411800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr11:8410800-8412000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:8410800-8412200	Enhancers	Fetal Kidney	kidney
28	chr11:8411000-8411600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:8411000-8411600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:8411000-8411600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:8411000-8411600	Active TSS	Brain Angular Gyrus	brain
32	chr11:8411000-8411600	Active TSS	Ovary	ovary
33	chr11:8411000-8413600	Weak transcription	Pancreas	Pancrea
34	chr11:8411000-8417600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:8411200-8411600	Active TSS	Brain Anterior Caudate	brain
36	chr11:8411200-8411600	Active TSS	Stomach Smooth Muscle	stomach
37	chr11:8411200-8411800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:8411200-8411800	Weak transcription	Fetal Thymus	thymus
39	chr11:8411200-8413800	Weak transcription	Right Ventricle	heart
40	chr11:8411200-8417200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:8411200-8417600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:8411200-8417600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:8411400-8411600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:8411400-8411800	Weak transcription	Left Ventricle	heart
45	chr11:8411400-8412000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr11:8411400-8412000	Enhancers	Brain Substantia Nigra	brain
47	chr11:8411400-8412000	Enhancers	Colon Smooth Muscle	Colon
48	chr11:8411400-8412000	Enhancers	Right Atrium	heart
49	chr11:8411400-8412200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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