Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1011858	0.83[ASN][1000 genomes]
rs10840032	0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.99[ASN][1000 genomes]
rs10840033	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840041	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041904	0.81[ASN][1000 genomes]
rs11041908	0.90[AFR][1000 genomes]
rs11041912	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041939	0.80[JPT][hapmap]
rs11041966	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs12222273	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224971	0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12226334	0.83[ASN][1000 genomes]
rs12284461	1.00[ASN][1000 genomes]
rs12363733	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12576010	1.00[ASN][1000 genomes]
rs12576952	1.00[ASN][1000 genomes]
rs2311435	0.94[ASN][1000 genomes]
rs4586148	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59645839	1.00[ASN][1000 genomes]
rs73402046	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7929310	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939568	0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999495	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10840037	C11orf17	cis	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8426600-8447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:8429600-8451200	Weak transcription	Fetal Heart	heart
3	chr11:8430600-8436400	Weak transcription	Left Ventricle	heart
4	chr11:8431400-8447000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8431400-8447400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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