Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1011858	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10840032	0.82[CHB][hapmap]
rs10840033	0.82[CHB][hapmap]
rs11041894	0.81[ASN][1000 genomes]
rs11041895	0.81[ASN][1000 genomes]
rs11041896	0.81[ASN][1000 genomes]
rs11041898	0.81[ASN][1000 genomes]
rs11041899	0.81[ASN][1000 genomes]
rs11041904	0.86[ASN][1000 genomes]
rs11041913	0.80[ASN][1000 genomes]
rs11041916	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041917	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041925	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11041939	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11041943	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11041966	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11041996	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11042000	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12224971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12226334	0.88[ASN][1000 genomes]
rs12363733	0.82[AMR][1000 genomes]
rs1992756	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs2028881	0.88[CHB][hapmap]
rs2311390	0.88[CHB][hapmap]
rs4586148	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7105027	0.87[CHB][hapmap]
rs7119274	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7939568	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv519052	chr11:8453594-8474884	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8460200-8481200	Weak transcription	Fetal Kidney	kidney
2	chr11:8462000-8484600	Weak transcription	Ovary	ovary
3	chr11:8464400-8483400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:8464400-8488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8464600-8484800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8464600-8485800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:8464600-8488200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:8464600-8489000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:8464600-8495800	Weak transcription	Fetal Heart	heart
10	chr11:8471800-8482600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:8473000-8477400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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