Variant report

Variant	rs12806736
Chromosome Location	chr11:8504174-8504175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10160430	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs10160804	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10444244	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10444316	0.86[CHB][hapmap]
rs10743076	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10743078	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10743079	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10743080	0.85[EUR][1000 genomes]
rs10743082	1.00[CEU][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs10769908	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10769910	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10769915	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs10769916	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs10769918	0.84[ASN][1000 genomes]
rs10769919	0.89[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769920	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769923	0.85[EUR][1000 genomes]
rs10840042	0.81[CEU][hapmap]
rs10840047	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10840051	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10840056	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10840060	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10840062	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs10840063	0.86[CHB][hapmap]
rs10840065	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10840077	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs10840079	0.83[EUR][1000 genomes]
rs10840081	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840083	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10840084	0.80[CEU][hapmap]
rs10840085	0.85[ASN][1000 genomes]
rs10840089	0.85[EUR][1000 genomes]
rs11041929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041950	0.85[CHB][hapmap]
rs11041978	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap]
rs11041982	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11041986	0.83[EUR][1000 genomes]
rs11041990	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11041993	0.81[ASN][1000 genomes]
rs11041994	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11041995	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11041997	0.80[ASN][1000 genomes]
rs12226478	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12785939	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12805671	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1374262	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs1374263	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1446464	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1900272	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes]
rs1900273	0.82[CHB][hapmap]
rs1992756	0.85[LWK][hapmap];0.83[MKK][hapmap]
rs2028881	1.00[YRI][hapmap]
rs2028882	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2289921	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs2289923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2311390	0.89[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs2871753	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs4131072	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4244804	0.85[CEU][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs4244806	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4344491	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4405311	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4520598	0.86[EUR][1000 genomes]
rs4758067	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929929	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4929941	1.00[CEU][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4929942	0.81[CEU][hapmap]
rs4929943	0.85[CEU][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs4929945	0.95[JPT][hapmap]
rs4929950	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7101471	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs7105027	0.84[LWK][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap]
rs7112153	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7119274	0.89[LWK][hapmap];0.88[MKK][hapmap];0.95[YRI][hapmap]
rs7126013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7126934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7127684	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs7129357	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs725502	0.81[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap]
rs726007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7929120	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7931604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7939731	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7945659	0.86[CHB][hapmap]
rs7947670	0.81[CHB][hapmap]
rs9284150	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9284151	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9300088	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9300089	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9300090	0.86[CHB][hapmap]
rs9300091	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs9300092	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9300093	0.84[CHB][hapmap]
rs9300094	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs935370	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9705083	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9736791	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs9737312	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12806736	STK33	cis	Artery Tibial	GTEx
rs12806736	STK33	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links