Variant report

Variant	rs10769910
Chromosome Location	chr11:8499406-8499407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr11:8499357-8499545	GM12878	blood:	n/a	n/a
2	BHLHE40	chr11:8499365-8499582	GM12878	blood:	n/a	n/a
3	EP300	chr11:8499277-8499574	GM12878	blood:	n/a	chr11:8499436-8499450
4	POLR2A	chr11:8499388-8499477	MCF10A-Er-Src	breast:	n/a	n/a
5	MEF2A	chr11:8499157-8499639	GM12878	blood:	n/a	chr11:8499174-8499195 chr11:8499601-8499622
6	BATF	chr11:8499285-8499609	GM12878	blood:	n/a	chr11:8499433-8499441
7	RUNX3	chr11:8499261-8499602	GM12878	blood:	n/a	n/a
8	EP300	chr11:8499122-8499593	GM12878	blood:	n/a	chr11:8499569-8499583 chr11:8499436-8499450
9	TBP	chr11:8499322-8499563	GM12878	blood:	n/a	n/a
10	CHD2	chr11:8499393-8499512	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
STK33	TF binding region

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10160430	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10160804	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs10160805	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10444244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10444316	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10743072	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743074	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10743076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10743081	0.80[EUR][1000 genomes]
rs10743082	0.81[CEU][hapmap]
rs10769905	0.85[CEU][hapmap]
rs10769907	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769915	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769916	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769918	0.88[EUR][1000 genomes]
rs10769921	0.84[EUR][1000 genomes]
rs10769922	0.84[EUR][1000 genomes]
rs10769924	0.87[EUR][1000 genomes]
rs10769925	0.84[EUR][1000 genomes]
rs10769926	0.84[EUR][1000 genomes]
rs10840047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840050	0.82[ASN][1000 genomes]
rs10840051	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840055	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10840063	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10840065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840072	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840077	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840080	0.89[EUR][1000 genomes]
rs10840083	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs10840084	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840085	0.88[EUR][1000 genomes]
rs10840087	0.88[EUR][1000 genomes]
rs10840091	0.81[EUR][1000 genomes]
rs10840103	0.85[CEU][hapmap]
rs11041924	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041929	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs11041950	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11041962	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041974	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041982	0.86[CHB][hapmap]
rs11041983	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11041985	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11041986	0.85[ASN][1000 genomes]
rs11041990	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs11041993	0.89[EUR][1000 genomes]
rs11041994	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs11041995	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs11041997	0.88[EUR][1000 genomes]
rs11041999	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042002	0.88[EUR][1000 genomes]
rs11493772	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576736	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12806736	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs1374262	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1446462	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1446463	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1446464	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1900272	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1900273	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2015629	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2028882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2044463	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2289921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2289923	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2311391	0.86[CEU][hapmap]
rs2871753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3969875	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4131072	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs4244804	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4418812	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4475924	0.85[EUR][1000 genomes]
rs4612809	0.85[EUR][1000 genomes]
rs4620720	0.85[EUR][1000 genomes]
rs4758067	0.81[CEU][hapmap];0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs4929941	0.81[CEU][hapmap]
rs4929942	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs4929943	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4929944	0.84[EUR][1000 genomes]
rs4929945	0.84[EUR][1000 genomes]
rs4929949	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4929950	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs6484485	0.84[EUR][1000 genomes]
rs6578968	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6578969	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7101471	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108993	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7112153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118189	0.81[EUR][1000 genomes]
rs7120065	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126013	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7126934	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs7127684	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7128727	0.81[EUR][1000 genomes]
rs7129564	0.81[EUR][1000 genomes]
rs725502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs726007	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs749263	0.86[CEU][hapmap]
rs7924753	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929120	0.84[CEU][hapmap]
rs7931604	0.82[CEU][hapmap];0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs7934396	0.86[EUR][1000 genomes]
rs7935708	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7945659	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947670	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7949017	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950870	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9284150	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs9284151	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs9300089	0.82[CHB][hapmap]
rs9300090	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9300091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9300092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9300093	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs935370	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9705083	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs9705253	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9736791	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9737312	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs9737401	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10769910	STK33	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8498800-8499600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr11:8499200-8500400	Enhancers	GM12878-XiMat	blood
3	chr11:8499400-8499600	Active TSS	Primary hematopoietic stem cells	blood

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