Variant report

Variant	rs4929949
Chromosome Location	chr11:8604593-8604594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8603406..8605457-chr11:8704251..8706004,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200983	Chromatin interaction
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10160430	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10160805	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10444244	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10444316	0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10743072	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10743074	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10743076	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10743080	0.83[AMR][1000 genomes]
rs10743081	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10769905	0.83[CEU][hapmap]
rs10769907	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769908	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769910	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769915	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769916	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769918	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10769921	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769922	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769923	0.84[AMR][1000 genomes]
rs10769924	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10769925	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769926	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769927	0.92[AMR][1000 genomes]
rs10769929	0.86[ASN][1000 genomes]
rs10840047	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840051	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840055	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840056	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840058	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840060	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840062	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10840063	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10840065	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840072	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840077	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840080	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840083	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10840084	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840085	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10840087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840089	0.83[AMR][1000 genomes]
rs10840091	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10840103	0.83[CEU][hapmap]
rs11041924	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041950	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs11041962	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041974	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041978	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11041983	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11041985	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11041986	0.95[ASN][1000 genomes]
rs11041990	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041993	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041994	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041995	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041997	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11041999	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042002	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11493772	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12277932	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12576736	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1374262	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1446462	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1446463	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1900272	0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1900273	0.86[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2015629	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2028882	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2044463	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289921	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2311391	0.83[CEU][hapmap]
rs2871753	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3969875	0.89[EUR][1000 genomes]
rs4244804	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4418812	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4475924	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4612809	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4620720	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4929941	0.84[AMR][1000 genomes]
rs4929942	0.95[CEU][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4929943	0.91[CEU][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4929944	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4929945	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6484485	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6578968	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6578969	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7101471	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7108993	0.83[CEU][hapmap]
rs7112153	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7120065	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7127684	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs725502	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs749263	0.83[CEU][hapmap]
rs7924753	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7934396	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935708	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7939731	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7945659	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7947670	0.95[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7949017	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7950870	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9300090	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9300091	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9300092	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs9300093	0.95[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs935370	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs9705083	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9705253	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9736791	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9737312	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9737401	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Body mass index	20935630	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4929949	STK33	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8595800-8606000	Weak transcription	Left Ventricle	heart
2	chr11:8599800-8605000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:8603400-8605400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links