Variant report

Variant	rs2311391
Chromosome Location	chr11:8431869-8431870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10160430	0.84[CEU][hapmap]
rs10444244	0.85[CEU][hapmap]
rs10444316	0.81[CEU][hapmap]
rs10743076	0.86[CEU][hapmap]
rs10769905	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769906	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769908	0.85[CEU][hapmap]
rs10769910	0.86[CEU][hapmap]
rs10769915	0.86[CEU][hapmap]
rs10769916	0.86[CEU][hapmap]
rs10840030	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840031	0.83[ASN][1000 genomes]
rs10840038	0.97[ASN][1000 genomes]
rs10840040	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840042	0.85[CEU][hapmap];0.99[ASN][1000 genomes]
rs10840047	0.85[CEU][hapmap]
rs10840051	0.86[CEU][hapmap]
rs10840056	0.86[CEU][hapmap]
rs10840060	0.85[CEU][hapmap]
rs10840062	0.85[CEU][hapmap]
rs10840063	0.85[CEU][hapmap]
rs10840065	0.85[CEU][hapmap]
rs10840077	0.85[CEU][hapmap]
rs10840083	0.81[CEU][hapmap]
rs10840084	0.85[CEU][hapmap]
rs11041897	0.82[ASN][1000 genomes]
rs11041900	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041914	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041950	0.83[CEU][hapmap]
rs11041978	0.85[CEU][hapmap]
rs11041990	0.81[CEU][hapmap]
rs11041994	0.82[CEU][hapmap]
rs11041995	0.82[CEU][hapmap]
rs12289586	0.93[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1374262	0.85[CEU][hapmap]
rs1900273	0.80[EUR][1000 genomes]
rs2028882	0.85[CEU][hapmap]
rs2121312	0.81[CEU][hapmap]
rs2289921	0.85[CEU][hapmap]
rs2311436	0.83[ASN][1000 genomes]
rs2871753	0.85[CEU][hapmap]
rs4244804	0.81[CEU][hapmap]
rs4304764	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929942	0.85[CEU][hapmap]
rs4929943	0.81[CEU][hapmap]
rs4929949	0.83[CEU][hapmap]
rs55810520	0.81[EUR][1000 genomes]
rs6578964	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6578968	0.80[EUR][1000 genomes]
rs7101471	0.85[CEU][hapmap]
rs7107739	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108993	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112153	0.85[CEU][hapmap]
rs7112477	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118189	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7127684	0.85[CEU][hapmap]
rs7128727	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7129564	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs725502	0.85[CEU][hapmap]
rs749263	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7929500	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935708	0.80[EUR][1000 genomes]
rs7939731	0.85[CEU][hapmap]
rs7947670	0.84[CEU][hapmap]
rs9300090	0.82[CEU][hapmap]
rs9300091	0.85[CEU][hapmap]
rs9300092	0.85[CEU][hapmap]
rs9300093	0.84[CEU][hapmap]
rs935370	0.82[CEU][hapmap]
rs9705083	0.82[CEU][hapmap]
rs9736791	0.85[CEU][hapmap]
rs9737312	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8426600-8447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:8429600-8451200	Weak transcription	Fetal Heart	heart
3	chr11:8430600-8436400	Weak transcription	Left Ventricle	heart
4	chr11:8431000-8434400	Weak transcription	Brain Substantia Nigra	brain
5	chr11:8431400-8447000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8431400-8447400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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