Variant report

Variant	rs11041978
Chromosome Location	chr11:8578150-8578151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10160430	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10160804	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10160805	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10444244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10444316	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10743072	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10743074	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10743076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10743081	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10743082	0.81[CEU][hapmap];0.80[CHD][hapmap]
rs10769905	0.85[CEU][hapmap]
rs10769907	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769908	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769915	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769916	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769918	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10769921	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769922	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769923	0.81[AMR][1000 genomes]
rs10769924	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769925	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769926	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769927	0.89[AMR][1000 genomes]
rs10769929	0.83[ASN][1000 genomes]
rs10840047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840051	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10840055	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840058	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840060	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10840063	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10840065	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840072	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840077	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840080	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10840083	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840084	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840085	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840087	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10840091	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10840100	0.84[MEX][hapmap]
rs10840103	0.85[CEU][hapmap]
rs11041924	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11041929	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs11041950	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041962	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041974	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11041982	0.86[CHB][hapmap]
rs11041983	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11041985	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11041986	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11041990	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11041993	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11041994	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11041995	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11041997	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041999	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042002	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042008	0.82[ASW][hapmap]
rs11042023	0.84[MEX][hapmap]
rs11493772	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12277932	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12575252	0.84[MEX][hapmap]
rs12576736	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12806736	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap]
rs1374262	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1446462	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446463	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446464	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap]
rs1900272	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1900273	0.81[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2015629	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2028882	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap]
rs2044463	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2289923	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2311391	0.85[CEU][hapmap]
rs2316901	0.84[MEX][hapmap]
rs2871753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3969875	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4131072	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs4244804	0.96[CEU][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4418812	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4475924	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4612809	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4620720	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4758067	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[MEX][hapmap]
rs4929923	0.84[MEX][hapmap]
rs4929927	0.84[MEX][hapmap]
rs4929941	0.81[CEU][hapmap];0.80[CHD][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs4929942	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4929943	0.82[ASW][hapmap];0.96[CEU][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929944	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929945	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929947	0.84[MEX][hapmap]
rs4929949	0.95[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4929950	0.81[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.80[MEX][hapmap]
rs6484485	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6578968	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6578969	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7101471	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7108993	0.85[CEU][hapmap]
rs7112153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7113874	0.84[MEX][hapmap]
rs7120065	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126013	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs7126934	0.83[CEU][hapmap];0.86[CHB][hapmap]
rs7127684	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs725502	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs726007	0.81[CEU][hapmap];0.86[CHB][hapmap];0.83[MEX][hapmap]
rs749263	0.85[CEU][hapmap]
rs7924753	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7929120	0.83[CEU][hapmap]
rs7931604	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs7934396	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935708	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7939731	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs7945659	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs7947670	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7949017	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7950870	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9284150	0.81[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.80[MEX][hapmap]
rs9284151	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs9300088	0.82[ASN][1000 genomes]
rs9300089	0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[MEX][hapmap]
rs9300090	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9300091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9300092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap]
rs9300093	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs935370	0.96[CEU][hapmap];0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs9705083	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9705253	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9736791	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9737312	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9737401	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs11041978	RPL27A	cis	parietal	SCAN
rs11041978	STK33	cis	cerebellum	SCAN
rs11041978	STK33	cis	Artery Tibial	GTEx
rs11041978	SNORA45	cis	parietal	SCAN
rs11041978	OR10A4	cis	parietal	SCAN
rs11041978	OR52N4	cis	cerebellum	SCAN
rs11041978	C11orf17	cis	multi-tissue	Pritchard
rs11041978	STK33	cis	parietal	SCAN
rs11041978	ARFIP2	cis	parietal	SCAN
rs11041978	OR51V1	cis	cerebellum	SCAN
rs11041978	ST5	cis	cerebellum	SCAN
rs11041978	RPL27A	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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