Variant report

Variant	rs7113874
Chromosome Location	chr11:8688016-8688017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8686787..8690212-chr11:8702684..8704839,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10128597	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10769931	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769932	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10769936	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10769938	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10769939	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840100	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840102	1.00[ASN][1000 genomes]
rs10840104	1.00[ASN][1000 genomes]
rs11041978	0.84[MEX][hapmap]
rs11042016	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042017	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042023	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042025	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11042029	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11042030	1.00[ASN][1000 genomes]
rs11517718	0.95[AFR][1000 genomes]
rs12271470	0.99[ASN][1000 genomes]
rs12575252	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1502317	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2028882	0.84[MEX][hapmap]
rs2316901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34867877	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35319120	0.98[ASN][1000 genomes]
rs36092927	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4256980	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272783	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4291677	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4495896	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4503528	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4929923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929924	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929925	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929926	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4929927	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4929928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4929942	0.84[MEX][hapmap]
rs4929943	0.84[MEX][hapmap]
rs4929947	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486253	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7110529	0.94[ASN][1000 genomes]
rs7118611	1.00[ASN][1000 genomes]
rs7126235	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725502	0.84[MEX][hapmap]
rs7939673	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7939731	0.84[MEX][hapmap]
rs7941510	1.00[ASN][1000 genomes]
rs7945659	0.91[MEX][hapmap]
rs7950166	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7950528	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs885114	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9300092	0.84[MEX][hapmap]
rs9736791	0.84[MEX][hapmap]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs7113874	SNORA45	cis	cerebellum	SCAN
rs7113874	IPO7	cis	cerebellum	SCAN
rs7113874	STK33	cis	cerebellum	SCAN
rs7113874	PKD1L2	trans	cerebellum	SCAN
rs7113874	CNGA4	cis	cerebellum	SCAN
rs7113874	SNORA45	cis	parietal	SCAN
rs7113874	RPL27A	cis	cerebellum	SCAN
rs7113874	OR52E2	cis	parietal	SCAN
rs7113874	RPL27A	cis	parietal	SCAN
rs7113874	OR10A4	cis	parietal	SCAN
rs7113874	ST5	cis	cerebellum	SCAN
rs7113874	OR51V1	cis	cerebellum	SCAN
rs7113874	OR56B4	cis	parietal	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8662600-8692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:8664200-8692800	Weak transcription	K562	blood
4	chr11:8664200-8700400	Weak transcription	Stomach Mucosa	stomach
5	chr11:8665800-8692600	Weak transcription	Fetal Kidney	kidney
6	chr11:8668200-8692400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:8668400-8692400	Weak transcription	A549	lung
8	chr11:8669400-8693000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:8669800-8691800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:8670000-8693400	Weak transcription	Colonic Mucosa	Colon
11	chr11:8670000-8693600	Weak transcription	Psoas Muscle	Psoas
12	chr11:8670200-8692400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:8670200-8692800	Weak transcription	Left Ventricle	heart
14	chr11:8670200-8692800	Weak transcription	Ovary	ovary
15	chr11:8670200-8693200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:8670400-8690400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:8670400-8693200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:8670600-8692800	Weak transcription	Primary B cells from cord blood	blood
19	chr11:8671200-8691200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:8671200-8693200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:8671400-8692400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:8671600-8690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:8671600-8690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:8671600-8692400	Weak transcription	Fetal Thymus	thymus
25	chr11:8671600-8692600	Weak transcription	Fetal Stomach	stomach
26	chr11:8671600-8692600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:8671600-8692600	Weak transcription	Hela-S3	cervix
28	chr11:8671600-8692800	Weak transcription	Lung	lung
29	chr11:8671600-8693200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:8671600-8693400	Weak transcription	Gastric	stomach
31	chr11:8672000-8692800	Weak transcription	Spleen	Spleen
32	chr11:8672200-8692800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:8672400-8691800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:8672400-8692600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:8672600-8688800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:8672600-8690400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:8672600-8692400	Weak transcription	Thymus	Thymus
38	chr11:8672600-8693200	Weak transcription	Esophagus	oesophagus
39	chr11:8672800-8689000	Weak transcription	Placenta	Placenta
40	chr11:8673800-8689800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:8673800-8692400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:8673800-8692800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:8673800-8693400	Weak transcription	Aorta	Aorta
44	chr11:8674200-8692400	Weak transcription	HSMMtube	muscle
45	chr11:8674400-8688200	Weak transcription	NHEK	skin
46	chr11:8674400-8690400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:8674400-8690600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:8674400-8691200	Weak transcription	HMEC	breast
49	chr11:8674400-8691800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:8674400-8693200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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