Variant report

Variant	rs10769931
Chromosome Location	chr11:8636105-8636106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8635996..8638733-chr11:8639792..8642248,2	K562	blood:

Variant related genes	Relation type
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128597	0.95[ASN][1000 genomes]
rs10769932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769936	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10769938	0.96[ASN][1000 genomes]
rs10769939	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840099	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840100	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840102	0.95[ASN][1000 genomes]
rs10840104	0.95[ASN][1000 genomes]
rs11042016	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042017	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042018	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042023	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042025	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11042029	0.95[ASN][1000 genomes]
rs11042030	0.95[ASN][1000 genomes]
rs12271470	0.94[ASN][1000 genomes]
rs12575252	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12803166	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1502317	0.89[ASN][1000 genomes]
rs2316901	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34867877	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35319120	0.96[ASN][1000 genomes]
rs36092927	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4256980	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4272783	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4291677	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4495896	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4503528	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4929923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929924	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929925	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929926	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929927	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929928	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929947	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929948	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486253	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110529	0.90[ASN][1000 genomes]
rs7113874	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118611	0.95[ASN][1000 genomes]
rs7126235	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939673	0.96[ASN][1000 genomes]
rs7941510	0.95[ASN][1000 genomes]
rs7950166	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7950528	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs885114	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10769931	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8637000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:8626000-8637200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:8626200-8637200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:8626400-8636200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:8626400-8636800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:8626400-8637200	Weak transcription	Pancreas	Pancrea
10	chr11:8626400-8637400	Weak transcription	Adipose Nuclei	Adipose
11	chr11:8626400-8638400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:8626400-8638400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:8626400-8643400	Weak transcription	Fetal Lung	lung
14	chr11:8626600-8637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:8626600-8639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
17	chr11:8626800-8637000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:8626800-8637200	Weak transcription	Esophagus	oesophagus
19	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
20	chr11:8627600-8637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:8627800-8637000	Weak transcription	HMEC	breast
22	chr11:8627800-8637200	Weak transcription	NHEK	skin
23	chr11:8627800-8642400	Weak transcription	A549	lung
24	chr11:8628000-8637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:8628800-8637200	Weak transcription	Primary T cells from cord blood	blood
26	chr11:8629200-8638000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:8630200-8642400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:8630600-8653000	Weak transcription	Osteobl	bone
29	chr11:8630800-8637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:8630800-8638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:8630800-8638400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:8630800-8645400	Weak transcription	NHLF	lung
33	chr11:8630800-8645600	Weak transcription	NH-A	brain
34	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
35	chr11:8631000-8637200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:8631000-8644000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:8631400-8636800	Weak transcription	Primary B cells from cord blood	blood
38	chr11:8632000-8637200	Weak transcription	Brain Anterior Caudate	brain
39	chr11:8632000-8637600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:8632000-8641600	Weak transcription	Brain Angular Gyrus	brain
41	chr11:8632200-8637200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:8632200-8639000	Weak transcription	Fetal Thymus	thymus
43	chr11:8632400-8644800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:8632600-8637800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:8632600-8638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:8632600-8644600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:8632800-8637200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:8632800-8643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:8632800-8644200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links