Variant report

Variant	rs11042016
Chromosome Location	chr11:8647124-8647125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:8647020-8647170	WERI-Rb-1	eye:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:8644589..8647498-chr11:8659025..8660844,2	MCF-7	breast:
2	chr11:8644859..8647194-chr11:8648029..8650090,2	K562	blood:
3	chr11:8641168..8642878-chr11:8644731..8647505,2	K562	blood:
4	chr11:8645853..8647429-chr11:8659220..8661284,2	K562	blood:
5	chr11:8645312..8647194-chr11:8647433..8649529,2	K562	blood:
6	chr11:8645853..8648717-chr11:8659784..8661524,2	K562	blood:
7	chr11:8524893..8527404-chr11:8645934..8647701,2	K562	blood:

No data

Variant related genes	Relation type
TRIM66	TF binding region
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128597	0.95[ASN][1000 genomes]
rs10769931	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769932	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769936	0.96[ASN][1000 genomes]
rs10769938	0.96[ASN][1000 genomes]
rs10769939	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840099	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840100	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840102	0.95[ASN][1000 genomes]
rs10840104	0.95[ASN][1000 genomes]
rs11042017	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042018	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042023	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042025	0.94[ASN][1000 genomes]
rs11042029	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11042030	0.95[ASN][1000 genomes]
rs12271470	0.94[ASN][1000 genomes]
rs12575252	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12803166	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1502317	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2316901	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34867877	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35319120	0.96[ASN][1000 genomes]
rs36092927	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4256980	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4272783	0.95[ASN][1000 genomes]
rs4291677	0.95[ASN][1000 genomes]
rs4495896	0.88[ASN][1000 genomes]
rs4503528	0.96[ASN][1000 genomes]
rs4929923	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929924	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929925	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929926	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929927	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929928	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929947	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929948	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486253	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110529	0.90[ASN][1000 genomes]
rs7113874	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118611	0.95[ASN][1000 genomes]
rs7126235	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939673	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7941510	0.95[ASN][1000 genomes]
rs7950166	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950528	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs885114	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11042016	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
5	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
6	chr11:8630600-8653000	Weak transcription	Osteobl	bone
7	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
9	chr11:8634200-8647200	Strong transcription	Liver	Liver
10	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:8634800-8657600	Weak transcription	Psoas Muscle	Psoas
13	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:8636600-8657000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:8636800-8647200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr11:8636800-8647400	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:8637000-8647200	Strong transcription	Fetal Intestine Small	intestine
19	chr11:8637000-8661600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
21	chr11:8637200-8647200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:8637200-8647200	Strong transcription	Aorta	Aorta
23	chr11:8637200-8647200	Strong transcription	Pancreas	Pancrea
24	chr11:8637200-8647200	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:8637200-8647200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:8637200-8647400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:8637200-8647600	Strong transcription	Primary T cells from cord blood	blood
28	chr11:8637200-8647600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:8637200-8648200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:8637200-8648800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:8637400-8647600	Strong transcription	Adipose Nuclei	Adipose
32	chr11:8637400-8659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:8637600-8647400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:8637600-8647400	Strong transcription	Fetal Stomach	stomach
35	chr11:8637800-8647400	Strong transcription	Thymus	Thymus
36	chr11:8637800-8657800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:8638000-8647200	Strong transcription	Gastric	stomach
38	chr11:8638400-8647200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:8638400-8657400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:8639600-8647400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:8639600-8661000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:8639800-8659800	Weak transcription	K562	blood
43	chr11:8640000-8647200	Strong transcription	Esophagus	oesophagus
44	chr11:8640200-8647200	Strong transcription	Ovary	ovary
45	chr11:8641400-8661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:8641600-8647200	Strong transcription	Brain Angular Gyrus	brain
47	chr11:8641800-8647400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:8641800-8647600	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:8641800-8666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:8642600-8650400	Weak transcription	HMEC	breast

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