Variant report

Variant	rs4929926
Chromosome Location	chr11:8658376-8658377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8656504..8659058-chr11:8708189..8710580,2	K562	blood:
2	chr11:8656731..8658560-chr11:8702346..8704110,2	K562	blood:
3	chr11:8656731..8659326-chr11:8702610..8704199,2	K562	blood:
4	chr11:8656504..8659058-chr11:8708189..8711996,3	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128597	0.98[ASN][1000 genomes]
rs10769931	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769932	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769936	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10769938	1.00[ASN][1000 genomes]
rs10769939	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840099	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840100	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840102	0.98[ASN][1000 genomes]
rs10840104	0.98[ASN][1000 genomes]
rs11042016	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042018	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042023	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042025	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11042029	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11042030	0.98[ASN][1000 genomes]
rs12271470	0.97[ASN][1000 genomes]
rs12575252	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12803166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1502317	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2316901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34867877	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35319120	1.00[ASN][1000 genomes]
rs36092927	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4256980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272783	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4291677	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4495896	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4503528	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4929923	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929924	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929925	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4929928	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4929947	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929948	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486253	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110529	0.92[ASN][1000 genomes]
rs7113874	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7118611	0.98[ASN][1000 genomes]
rs7126235	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939673	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7941510	0.98[ASN][1000 genomes]
rs7950166	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7950528	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885114	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
4	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
6	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:8637000-8661600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
12	chr11:8637400-8659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:8639600-8661000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:8639800-8659800	Weak transcription	K562	blood
15	chr11:8641400-8661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:8641800-8666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:8643400-8658800	Weak transcription	HSMMtube	muscle
18	chr11:8643800-8659200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:8644800-8663400	Weak transcription	Fetal Lung	lung
20	chr11:8644800-8667000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:8646000-8661600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:8646200-8671000	Weak transcription	HUVEC	blood vessel
23	chr11:8646400-8666400	Weak transcription	HSMM	muscle
24	chr11:8647000-8659200	Weak transcription	NHEK	skin
25	chr11:8647000-8661200	Weak transcription	Right Ventricle	heart
26	chr11:8647400-8659800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:8649600-8665400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:8650800-8676200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:8652200-8675000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:8653200-8659800	Weak transcription	NHDF-Ad	bronchial
31	chr11:8653400-8659600	Weak transcription	Osteobl	bone
32	chr11:8653400-8659800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:8653400-8659800	Weak transcription	NH-A	brain
34	chr11:8653400-8659800	Weak transcription	NHLF	lung
35	chr11:8653400-8663800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:8653400-8664000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:8653400-8667000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:8653600-8661600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:8654000-8673800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr11:8654200-8662000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:8654200-8663200	Weak transcription	Fetal Brain Male	brain
42	chr11:8654200-8673800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:8654200-8675600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:8654400-8672400	Strong transcription	Brain Anterior Caudate	brain
45	chr11:8655000-8662000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:8655000-8662600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:8655000-8664200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:8655000-8664200	Strong transcription	Fetal Stomach	stomach
49	chr11:8655000-8670200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:8655000-8676400	Strong transcription	Primary T cells from cord blood	blood

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