Variant report

Variant	rs10128597
Chromosome Location	chr11:8694830-8694831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8693907..8695992-chr11:8931800..8933882,2	MCF-7	breast:
2	chr11:8690506..8692188-chr11:8693697..8695262,2	K562	blood:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction
ENSG00000166452	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10743084	0.91[LWK][hapmap];0.93[YRI][hapmap]
rs10769931	0.95[ASN][1000 genomes]
rs10769932	0.90[ASN][1000 genomes]
rs10769936	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769938	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769939	1.00[ASN][1000 genomes]
rs10840099	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10840100	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10840102	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840104	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042016	0.95[ASN][1000 genomes]
rs11042017	0.99[ASN][1000 genomes]
rs11042018	0.99[ASN][1000 genomes]
rs11042023	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11042025	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042029	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042030	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042033	0.81[AFR][1000 genomes]
rs12271470	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12575252	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12577287	0.82[CEU][hapmap]
rs12803166	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1502317	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2316901	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs34867877	0.96[ASN][1000 genomes]
rs35319120	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36092927	0.98[ASN][1000 genomes]
rs3942866	0.93[YRI][hapmap]
rs4256980	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4272783	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4291677	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495896	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4503528	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4929923	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4929924	0.96[ASN][1000 genomes]
rs4929925	0.99[ASN][1000 genomes]
rs4929926	0.98[ASN][1000 genomes]
rs4929927	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4929928	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4929947	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4929948	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6486253	0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7110529	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113874	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7118611	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126235	1.00[ASN][1000 genomes]
rs7939673	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941510	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950166	0.96[ASN][1000 genomes]
rs7950528	0.96[ASN][1000 genomes]
rs885114	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10128597	OR10A4	cis	parietal	SCAN
rs10128597	CNGA4	cis	cerebellum	SCAN
rs10128597	TRIM66	cis	Whole Blood	GTEx
rs10128597	SNORA45	cis	parietal	SCAN
rs10128597	RPL27A	cis	cerebellum	SCAN
rs10128597	ST5	cis	cerebellum	SCAN
rs10128597	STK33	cis	cerebellum	SCAN
rs10128597	IPO7	cis	cerebellum	SCAN
rs10128597	SNORA45	cis	cerebellum	SCAN
rs10128597	RPL27A	cis	parietal	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8664200-8700400	Weak transcription	Stomach Mucosa	stomach
3	chr11:8684000-8701600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr11:8684400-8701400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:8689400-8696000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:8690000-8703000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:8690400-8701200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr11:8691200-8696400	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:8691800-8695800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:8692000-8696000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:8693600-8695800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:8693600-8700200	Weak transcription	HepG2	liver
13	chr11:8693600-8703000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:8693600-8703200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:8693600-8703200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:8693600-8703200	Weak transcription	Fetal Lung	lung
17	chr11:8693600-8703400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:8693600-8703400	Weak transcription	Ovary	ovary
19	chr11:8693800-8695400	Weak transcription	Fetal Intestine Small	intestine
20	chr11:8693800-8700200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:8693800-8700200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:8693800-8700400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:8693800-8700400	Weak transcription	Aorta	Aorta
24	chr11:8693800-8700400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:8693800-8700600	Weak transcription	Fetal Thymus	thymus
26	chr11:8693800-8701000	Weak transcription	Gastric	stomach
27	chr11:8693800-8703000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:8693800-8703000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:8693800-8703000	Weak transcription	Hela-S3	cervix
30	chr11:8693800-8703200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:8693800-8703200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:8693800-8703200	Weak transcription	Brain Substantia Nigra	brain
35	chr11:8693800-8703200	Weak transcription	Colonic Mucosa	Colon
36	chr11:8693800-8703200	Weak transcription	Fetal Brain Female	brain
37	chr11:8693800-8703400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:8693800-8703400	Weak transcription	Brain Germinal Matrix	brain
39	chr11:8693800-8703600	Weak transcription	Spleen	Spleen
40	chr11:8694000-8695000	Weak transcription	Liver	Liver
41	chr11:8694000-8695000	Weak transcription	A549	lung
42	chr11:8694000-8695000	Weak transcription	NHDF-Ad	bronchial
43	chr11:8694000-8695400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:8694000-8695400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:8694000-8695800	Weak transcription	Lung	lung
46	chr11:8694000-8696600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:8694000-8697600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:8694000-8697600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:8694000-8697800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:8694000-8698000	Weak transcription	H1 Cell Line	embryonic stem cell

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