Variant report

Variant	rs36092927
Chromosome Location	chr11:8692339-8692340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8673685..8676178-chr11:8690727..8693204,2	K562	blood:
2	chr11:8682997..8685981-chr11:8690631..8692765,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10128597	0.98[ASN][1000 genomes]
rs10769931	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769932	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769936	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10769938	0.96[ASN][1000 genomes]
rs10769939	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840099	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840100	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840102	0.98[ASN][1000 genomes]
rs10840104	0.98[ASN][1000 genomes]
rs11042016	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042017	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042018	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042023	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042025	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11042029	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11042030	0.98[ASN][1000 genomes]
rs11517718	0.96[AFR][1000 genomes]
rs12271470	0.97[ASN][1000 genomes]
rs12575252	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12803166	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1502317	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2316901	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34867877	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35319120	0.96[ASN][1000 genomes]
rs4256980	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4272783	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4291677	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4495896	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4503528	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4929923	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929924	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929925	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929926	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929927	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4929928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4929947	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4929948	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486253	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110529	0.92[ASN][1000 genomes]
rs7113874	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7118611	0.98[ASN][1000 genomes]
rs7126235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939673	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7941510	0.98[ASN][1000 genomes]
rs7950166	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950528	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885114	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36092927	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8664200-8692800	Weak transcription	K562	blood
3	chr11:8664200-8700400	Weak transcription	Stomach Mucosa	stomach
4	chr11:8665800-8692600	Weak transcription	Fetal Kidney	kidney
5	chr11:8668200-8692400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:8668400-8692400	Weak transcription	A549	lung
7	chr11:8669400-8693000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:8670000-8693400	Weak transcription	Colonic Mucosa	Colon
9	chr11:8670000-8693600	Weak transcription	Psoas Muscle	Psoas
10	chr11:8670200-8692400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:8670200-8692800	Weak transcription	Left Ventricle	heart
12	chr11:8670200-8692800	Weak transcription	Ovary	ovary
13	chr11:8670200-8693200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:8670400-8693200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:8670600-8692800	Weak transcription	Primary B cells from cord blood	blood
16	chr11:8671200-8693200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:8671400-8692400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:8671600-8692400	Weak transcription	Fetal Thymus	thymus
19	chr11:8671600-8692600	Weak transcription	Fetal Stomach	stomach
20	chr11:8671600-8692600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:8671600-8692600	Weak transcription	Hela-S3	cervix
22	chr11:8671600-8692800	Weak transcription	Lung	lung
23	chr11:8671600-8693200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:8671600-8693400	Weak transcription	Gastric	stomach
25	chr11:8672000-8692800	Weak transcription	Spleen	Spleen
26	chr11:8672200-8692800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:8672400-8692600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:8672600-8692400	Weak transcription	Thymus	Thymus
29	chr11:8672600-8693200	Weak transcription	Esophagus	oesophagus
30	chr11:8673800-8692400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:8673800-8692800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:8673800-8693400	Weak transcription	Aorta	Aorta
33	chr11:8674200-8692400	Weak transcription	HSMMtube	muscle
34	chr11:8674400-8693200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:8674400-8693200	Weak transcription	Pancreas	Pancrea
36	chr11:8674600-8692400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:8676400-8692400	Weak transcription	GM12878-XiMat	blood
38	chr11:8680200-8692400	Weak transcription	Brain Germinal Matrix	brain
39	chr11:8680600-8692400	Weak transcription	Brain Angular Gyrus	brain
40	chr11:8680600-8692400	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:8680600-8693200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:8680600-8693200	Weak transcription	Brain Substantia Nigra	brain
43	chr11:8680800-8692400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:8680800-8692400	Weak transcription	Adipose Nuclei	Adipose
45	chr11:8680800-8692400	Weak transcription	Brain Anterior Caudate	brain
46	chr11:8680800-8693200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:8683400-8692800	Strong transcription	Liver	Liver
48	chr11:8684000-8701600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:8684400-8701400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:8684800-8692400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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