Variant report

Variant	rs10769925
Chromosome Location	chr11:8623585-8623586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10160430	0.96[CEU][hapmap];0.80[CHB][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10160804	0.86[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10160805	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10444244	0.96[CEU][hapmap]
rs10444316	0.96[CEU][hapmap]
rs10743072	0.84[EUR][1000 genomes]
rs10743074	0.82[EUR][1000 genomes]
rs10743076	0.96[CEU][hapmap]
rs10743078	0.91[ASN][1000 genomes]
rs10743079	0.91[ASN][1000 genomes]
rs10743080	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10743081	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743082	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10769905	0.82[CEU][hapmap]
rs10769907	0.82[EUR][1000 genomes]
rs10769908	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10769910	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10769915	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769916	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10769918	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769919	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10769920	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10769921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769922	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769923	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10769924	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10769926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769927	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840047	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs10840051	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10840055	0.83[EUR][1000 genomes]
rs10840056	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs10840058	0.84[EUR][1000 genomes]
rs10840060	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10840062	0.96[CEU][hapmap]
rs10840063	0.93[CEU][hapmap]
rs10840065	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs10840072	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840077	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10840079	0.81[ASN][1000 genomes]
rs10840080	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10840081	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10840083	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840084	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10840085	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840087	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840089	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10840091	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840103	0.82[CEU][hapmap]
rs11041924	0.80[EUR][1000 genomes]
rs11041929	0.89[CEU][hapmap];0.96[JPT][hapmap]
rs11041950	0.92[CEU][hapmap]
rs11041962	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11041974	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11041978	0.96[CEU][hapmap]
rs11041982	0.82[CEU][hapmap];0.96[JPT][hapmap]
rs11041983	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11041985	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11041990	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11041993	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11041994	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041995	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041997	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11041999	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11042002	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11493772	0.83[EUR][1000 genomes]
rs12226478	0.85[ASN][1000 genomes]
rs12277932	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12576736	0.82[EUR][1000 genomes]
rs12785939	0.84[ASN][1000 genomes]
rs12805671	0.84[ASN][1000 genomes]
rs12806736	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1374262	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs1446462	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1446463	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1446464	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1900272	0.82[CEU][hapmap]
rs1900273	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2015629	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2028882	0.96[CEU][hapmap]
rs2044463	0.82[EUR][1000 genomes]
rs2289921	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2289923	0.85[CEU][hapmap];0.96[JPT][hapmap]
rs2311391	0.82[CEU][hapmap]
rs2871753	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs3969875	0.81[EUR][1000 genomes]
rs4131072	0.86[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.91[ASN][1000 genomes]
rs4244804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244806	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4344491	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4405311	0.88[ASN][1000 genomes]
rs4418812	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4475924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520598	0.99[ASN][1000 genomes]
rs4612809	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620720	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758067	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs4929929	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4929941	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4929942	0.96[CEU][hapmap];0.87[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4929943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929944	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929945	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4929949	0.91[CEU][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4929950	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6484485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6578968	0.84[EUR][1000 genomes]
rs6578969	0.84[EUR][1000 genomes]
rs7101471	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs7108993	0.82[CEU][hapmap]
rs7112153	0.96[CEU][hapmap]
rs7120065	0.82[EUR][1000 genomes]
rs7126013	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs7126934	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs7127684	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs725502	0.96[CEU][hapmap]
rs726007	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs7924753	0.84[EUR][1000 genomes]
rs7929120	0.84[CEU][hapmap];0.84[ASN][1000 genomes]
rs7931604	0.85[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap]
rs7934396	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7935708	0.84[EUR][1000 genomes]
rs7939731	0.96[CEU][hapmap]
rs7945659	0.81[CEU][hapmap]
rs7947670	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7949017	0.84[EUR][1000 genomes]
rs7950870	0.81[AMR][1000 genomes]
rs9284150	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9284151	0.85[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.91[ASN][1000 genomes]
rs9300088	0.85[ASN][1000 genomes]
rs9300089	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9300090	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9300091	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9300092	0.96[CEU][hapmap]
rs9300093	0.96[CEU][hapmap]
rs9300094	0.90[ASN][1000 genomes]
rs935370	1.00[CEU][hapmap];0.96[JPT][hapmap];0.86[EUR][1000 genomes]
rs9705083	1.00[CEU][hapmap];0.96[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9705253	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9736791	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9737312	1.00[CEU][hapmap];0.96[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9737401	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10769925	STK33	cis	Artery Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8616600-8625600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:8617000-8625400	Weak transcription	GM12878-XiMat	blood
3	chr11:8619600-8625200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:8622800-8623600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:8622800-8623600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:8623000-8623600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8623200-8623600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:8623200-8625800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:8623400-8625000	Weak transcription	A549	lung
10	chr11:8623400-8625400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:8623400-8634200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links