Variant report

Variant	rs11041983
Chromosome Location	chr11:8580619-8580620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10160430	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10160804	0.81[ASN][1000 genomes]
rs10160805	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10743072	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10743074	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10743078	0.81[ASN][1000 genomes]
rs10743079	0.81[ASN][1000 genomes]
rs10743081	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10769907	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10769908	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769910	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769912	1.00[CEU][hapmap]
rs10769915	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769916	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769918	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10769921	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769922	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769924	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10769925	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769926	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769927	0.88[AMR][1000 genomes]
rs10769929	0.85[ASN][1000 genomes]
rs10840046	1.00[CEU][hapmap]
rs10840047	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840049	1.00[CEU][hapmap]
rs10840051	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840053	1.00[CEU][hapmap]
rs10840055	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840056	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840058	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840059	1.00[CEU][hapmap]
rs10840060	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840065	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840069	1.00[CEU][hapmap]
rs10840071	1.00[CEU][hapmap]
rs10840072	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840074	1.00[CEU][hapmap]
rs10840077	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840080	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840083	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840084	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840085	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840087	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840088	1.00[CEU][hapmap]
rs10840091	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11041909	1.00[CEU][hapmap]
rs11041921	1.00[CEU][hapmap]
rs11041923	1.00[CEU][hapmap]
rs11041924	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041928	1.00[CEU][hapmap]
rs11041938	1.00[CEU][hapmap]
rs11041942	1.00[CEU][hapmap]
rs11041945	1.00[CEU][hapmap]
rs11041946	1.00[CEU][hapmap]
rs11041962	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041974	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041985	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041986	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11041987	1.00[CEU][hapmap]
rs11041988	1.00[CEU][hapmap]
rs11041989	1.00[CEU][hapmap]
rs11041990	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041992	1.00[CEU][hapmap]
rs11041993	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041994	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041995	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041997	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11041999	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042002	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11042027	1.00[CEU][hapmap]
rs11493772	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12277932	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12281285	1.00[CEU][hapmap]
rs12283443	1.00[CEU][hapmap]
rs12289533	1.00[CEU][hapmap]
rs12292871	1.00[CEU][hapmap]
rs12362755	1.00[CEU][hapmap]
rs12419725	1.00[CEU][hapmap]
rs12576736	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374262	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1446462	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1446463	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867812	1.00[CEU][hapmap]
rs1900272	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1900273	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2015629	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2044463	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289921	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2871753	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3969875	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4131072	0.81[ASN][1000 genomes]
rs4244804	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4418812	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4450173	1.00[CEU][hapmap]
rs4475924	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4612809	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4620720	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4929942	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4929943	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4929944	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929945	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929949	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929950	0.80[ASN][1000 genomes]
rs6484485	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6578968	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578969	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7101471	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7102605	1.00[CEU][hapmap]
rs7108379	1.00[CEU][hapmap]
rs7112153	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7120065	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7127684	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127840	1.00[CEU][hapmap]
rs7924753	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7929546	1.00[CEU][hapmap]
rs7934396	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7935708	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7947670	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7949017	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7950870	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9284150	0.81[ASN][1000 genomes]
rs9284151	0.81[ASN][1000 genomes]
rs9300089	0.81[ASN][1000 genomes]
rs9300090	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9300091	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9300094	0.80[ASN][1000 genomes]
rs935370	0.88[EUR][1000 genomes]
rs9705083	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9705253	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9736791	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9737312	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9737401	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11041983	STK33	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8580400-8588600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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