Variant report

Variant	rs11041921
Chromosome Location	chr11:8456187-8456188
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10769912	1.00[CEU][hapmap]
rs10840044	0.82[ASN][1000 genomes]
rs10840046	1.00[CEU][hapmap]
rs10840048	1.00[CHB][hapmap]
rs10840049	1.00[CEU][hapmap]
rs10840053	1.00[CEU][hapmap]
rs10840059	1.00[CEU][hapmap]
rs10840069	1.00[CEU][hapmap]
rs10840071	1.00[CEU][hapmap]
rs10840074	1.00[CEU][hapmap]
rs10840088	1.00[CEU][hapmap]
rs11041909	1.00[CEU][hapmap]
rs11041922	0.95[AFR][1000 genomes]
rs11041923	1.00[CEU][hapmap];0.95[AFR][1000 genomes]
rs11041928	1.00[CEU][hapmap]
rs11041938	1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs11041942	1.00[CEU][hapmap]
rs11041945	1.00[CEU][hapmap]
rs11041946	1.00[CEU][hapmap]
rs11041983	1.00[CEU][hapmap]
rs11041987	1.00[CEU][hapmap]
rs11041988	1.00[CEU][hapmap]
rs11041989	1.00[CEU][hapmap]
rs11041992	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11512437	1.00[CHB][hapmap]
rs12281285	1.00[CEU][hapmap]
rs12283443	1.00[CEU][hapmap]
rs12289533	1.00[CEU][hapmap]
rs12292871	1.00[CEU][hapmap]
rs12361165	0.89[EUR][1000 genomes]
rs12362755	1.00[CEU][hapmap]
rs12364713	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12419725	1.00[CEU][hapmap]
rs12573963	0.84[AFR][1000 genomes]
rs1867812	1.00[CEU][hapmap]
rs34381273	0.96[EUR][1000 genomes]
rs4450173	1.00[CEU][hapmap]
rs55740932	0.95[ASN][1000 genomes]
rs58364522	0.96[EUR][1000 genomes]
rs7102605	1.00[CEU][hapmap]
rs7108120	0.96[EUR][1000 genomes]
rs7108379	1.00[CEU][hapmap]
rs7127840	1.00[CEU][hapmap]
rs7929546	1.00[CEU][hapmap]
rs7941278	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv519052	chr11:8453594-8474884	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8446400-8464000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8447800-8464200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:8448000-8461000	Weak transcription	Ovary	ovary
4	chr11:8451600-8463600	Weak transcription	Fetal Heart	heart
5	chr11:8451600-8464000	Weak transcription	Left Ventricle	heart
6	chr11:8453800-8464000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:8454400-8458200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:8454600-8456200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:8456000-8456400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:8456000-8456400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:8456000-8456600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:8456000-8456800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:8456000-8457000	ZNF genes & repeats	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links