Variant report

Variant	rs11041938
Chromosome Location	chr11:8490506-8490507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:8490444-8490581	HepG2	liver:	n/a	n/a
2	MAFK	chr11:8490447-8490606	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
STK33	TF binding region

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10437594	0.96[ASN][1000 genomes]
rs10437663	0.96[ASN][1000 genomes]
rs10743077	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769909	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769913	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840048	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840054	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840068	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840073	1.00[ASN][1000 genomes]
rs10840074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840075	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840076	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840078	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840082	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840086	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041909	1.00[CEU][hapmap]
rs11041921	1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs11041922	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041936	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041937	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11041948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041956	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041957	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041959	1.00[ASN][1000 genomes]
rs11041961	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041983	1.00[CEU][hapmap]
rs11041984	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11041992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042001	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042005	0.90[ASN][1000 genomes]
rs11042009	0.87[ASN][1000 genomes]
rs11042010	0.96[ASN][1000 genomes]
rs11042027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11512437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517716	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12281197	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12281285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12282087	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12283443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12292871	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs12361165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12362755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12364516	0.80[ASN][1000 genomes]
rs12364713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12365973	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418359	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418525	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12419725	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12422205	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575045	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100066	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34381273	0.93[ASN][1000 genomes]
rs4450173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627069	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58364522	1.00[ASN][1000 genomes]
rs59084068	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7102605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108120	0.90[ASN][1000 genomes]
rs7108379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726008	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403636	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408023	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408025	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7941120	0.81[ASN][1000 genomes]
rs9737172	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8464600-8495800	Weak transcription	Fetal Heart	heart
2	chr11:8474200-8491400	Weak transcription	Pancreas	Pancrea
3	chr11:8481800-8491000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:8483600-8491000	Weak transcription	Gastric	stomach
5	chr11:8488200-8491600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:8488200-8492600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:8489000-8491400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr11:8490000-8491400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:8490000-8497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:8490000-8497600	Weak transcription	Ovary	ovary
11	chr11:8490200-8491000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:8490200-8491200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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