Variant report

Variant	rs10840086
Chromosome Location	chr11:8614638-8614639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8614018..8615815-chr11:8704377..8705921,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction
ENSG00000200983	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10437594	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10437663	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10743077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840046	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840048	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840053	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840054	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840059	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840069	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840073	1.00[ASN][1000 genomes]
rs10840074	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840075	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840088	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041928	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041938	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041959	1.00[ASN][1000 genomes]
rs11041961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041984	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041987	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041988	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041989	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041992	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042001	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042005	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042009	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042010	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042027	0.87[EUR][1000 genomes]
rs11512437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12282087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282398	1.00[ASN][1000 genomes]
rs12283443	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361165	1.00[ASN][1000 genomes]
rs12362755	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12364516	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12364713	0.93[ASN][1000 genomes]
rs12365973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418525	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419725	1.00[EUR][1000 genomes]
rs12422205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34381273	0.93[ASN][1000 genomes]
rs4450173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627069	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58364522	1.00[ASN][1000 genomes]
rs59084068	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7102605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108120	0.90[ASN][1000 genomes]
rs7108379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726008	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941120	0.81[ASN][1000 genomes]
rs9737172	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8606200-8614800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:8606200-8614800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:8606400-8614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:8606400-8615000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8606400-8615000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:8606600-8614800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:8606600-8614800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:8608400-8615000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:8610000-8614800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:8610000-8615400	Weak transcription	Aorta	Aorta
11	chr11:8613800-8614800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:8613800-8615000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:8614600-8614800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:8614600-8614800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:8614600-8614800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:8614600-8614800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:8614600-8614800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:8614600-8614800	Enhancers	Colon Smooth Muscle	Colon
19	chr11:8614600-8614800	Enhancers	Fetal Lung	lung
20	chr11:8614600-8614800	Enhancers	Ovary	ovary
21	chr11:8614600-8615000	Enhancers	Fetal Heart	heart
22	chr11:8614600-8615000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:8614600-8615200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:8614600-8616000	Active TSS	GM12878-XiMat	blood
25	chr11:8614600-8616400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:8614600-8616400	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr11:8614600-8616400	Active TSS	iPS-20b Cell Line	embryonic stem cell

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