Variant report

Variant	rs7108120
Chromosome Location	chr11:8467846-8467847
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10437594	0.87[ASN][1000 genomes]
rs10437663	0.87[ASN][1000 genomes]
rs10743077	0.90[ASN][1000 genomes]
rs10769909	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10769912	0.90[ASN][1000 genomes]
rs10769913	0.90[ASN][1000 genomes]
rs10840046	1.00[ASN][1000 genomes]
rs10840048	1.00[ASN][1000 genomes]
rs10840049	0.90[ASN][1000 genomes]
rs10840053	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10840054	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10840059	0.90[ASN][1000 genomes]
rs10840068	0.90[ASN][1000 genomes]
rs10840069	0.90[ASN][1000 genomes]
rs10840071	0.90[ASN][1000 genomes]
rs10840073	0.90[ASN][1000 genomes]
rs10840074	0.83[ASN][1000 genomes]
rs10840075	0.81[ASN][1000 genomes]
rs10840076	0.81[ASN][1000 genomes]
rs10840078	0.81[ASN][1000 genomes]
rs10840082	0.81[ASN][1000 genomes]
rs10840086	0.90[ASN][1000 genomes]
rs10840088	0.90[ASN][1000 genomes]
rs11041921	0.96[EUR][1000 genomes]
rs11041922	1.00[ASN][1000 genomes]
rs11041923	1.00[ASN][1000 genomes]
rs11041928	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11041936	0.90[ASN][1000 genomes]
rs11041937	0.90[ASN][1000 genomes]
rs11041938	0.90[ASN][1000 genomes]
rs11041942	0.90[ASN][1000 genomes]
rs11041956	0.90[ASN][1000 genomes]
rs11041957	0.90[ASN][1000 genomes]
rs11041959	0.90[ASN][1000 genomes]
rs11041961	0.90[ASN][1000 genomes]
rs11041984	0.83[ASN][1000 genomes]
rs11041987	0.83[ASN][1000 genomes]
rs11041988	0.83[ASN][1000 genomes]
rs11041989	0.83[ASN][1000 genomes]
rs11041992	0.83[ASN][1000 genomes]
rs11042001	0.81[ASN][1000 genomes]
rs11042005	0.81[ASN][1000 genomes]
rs11042010	0.87[ASN][1000 genomes]
rs11512437	0.90[ASN][1000 genomes]
rs11517716	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12281197	0.81[ASN][1000 genomes]
rs12282087	0.90[ASN][1000 genomes]
rs12282398	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12283443	0.90[ASN][1000 genomes]
rs12361165	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12364713	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12365973	0.90[ASN][1000 genomes]
rs12418359	0.90[ASN][1000 genomes]
rs12418525	0.90[ASN][1000 genomes]
rs12422205	0.90[ASN][1000 genomes]
rs12573963	0.90[ASN][1000 genomes]
rs12575045	0.90[ASN][1000 genomes]
rs1867812	0.90[ASN][1000 genomes]
rs2100066	0.90[ASN][1000 genomes]
rs34381273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4450173	0.90[ASN][1000 genomes]
rs4627069	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58364522	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59084068	1.00[ASN][1000 genomes]
rs7102605	0.90[ASN][1000 genomes]
rs7108379	0.90[ASN][1000 genomes]
rs7127840	0.90[ASN][1000 genomes]
rs726008	1.00[ASN][1000 genomes]
rs73403636	0.90[ASN][1000 genomes]
rs73408023	0.90[ASN][1000 genomes]
rs73408025	0.90[ASN][1000 genomes]
rs7941278	0.86[EUR][1000 genomes]
rs9737172	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv519052	chr11:8453594-8474884	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3355444	chr11:8465176-8469474	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3423613	chr11:8466776-8471074	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8460200-8481200	Weak transcription	Fetal Kidney	kidney
2	chr11:8462000-8484600	Weak transcription	Ovary	ovary
3	chr11:8464400-8483400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:8464400-8488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8464600-8484800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8464600-8485800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:8464600-8488200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:8464600-8489000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:8464600-8495800	Weak transcription	Fetal Heart	heart

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