Variant report

Variant	rs10840053
Chromosome Location	chr11:8482549-8482550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8481047..8482707-chr11:8494545..8496068,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10437594	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10437663	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10743077	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769909	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769913	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840048	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840054	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840068	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840073	0.93[ASN][1000 genomes]
rs10840074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10840075	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840076	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840078	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840082	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840086	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041909	1.00[CEU][hapmap]
rs11041921	1.00[CEU][hapmap]
rs11041922	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11041923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11041928	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041936	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041937	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041942	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]
rs11041946	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11041948	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs11041956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041957	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041959	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11041961	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041983	1.00[CEU][hapmap]
rs11041984	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11041987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11041988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11041989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11041992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042001	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042005	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042009	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042010	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042027	0.87[EUR][1000 genomes]
rs11512437	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11517716	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12276661	1.00[CHB][hapmap]
rs12281197	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12281285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs12282087	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12282398	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12283443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12289533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap]
rs12292871	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs12361165	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs12362755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12364516	0.87[EUR][1000 genomes]
rs12364713	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12365973	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418359	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418525	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12419725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12422205	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12573963	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12575045	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2100066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34381273	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4450173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4627069	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58364522	0.93[ASN][1000 genomes]
rs59084068	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7102605	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108120	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7108379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7127840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs726008	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73403636	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408023	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408025	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7929546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap]
rs7950801	1.00[MEX][hapmap]
rs9737172	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8462000-8484600	Weak transcription	Ovary	ovary
2	chr11:8464400-8483400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:8464400-8488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:8464600-8484800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:8464600-8485800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:8464600-8488200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:8464600-8489000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:8464600-8495800	Weak transcription	Fetal Heart	heart
9	chr11:8471800-8482600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:8474200-8491400	Weak transcription	Pancreas	Pancrea
11	chr11:8477400-8488000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:8479000-8483200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:8479400-8489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:8481800-8491000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:8482000-8488400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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