Variant report

Variant	rs7950801
Chromosome Location	chr11:8670172-8670173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:8663090-8674809	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8670015..8672581-chr11:8709209..8711726,2	MCF-7	breast:

Variant related genes	Relation type
TRIM66	TF binding region
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10743085	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs10769912	1.00[MEX][hapmap]
rs10769933	0.80[YRI][hapmap]
rs10769934	0.87[AFR][1000 genomes]
rs10769937	0.88[AFR][1000 genomes]
rs10840049	1.00[MEX][hapmap]
rs10840053	1.00[MEX][hapmap]
rs10840071	1.00[MEX][hapmap]
rs10840096	0.91[LWK][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs11041928	1.00[MEX][hapmap]
rs11041942	1.00[MEX][hapmap]
rs11041945	1.00[MEX][hapmap]
rs11041987	1.00[MEX][hapmap]
rs11041989	1.00[MEX][hapmap]
rs11041992	1.00[MEX][hapmap]
rs1128559	0.84[YRI][hapmap]
rs12282398	1.00[MEX][hapmap]
rs12292871	1.00[MEX][hapmap]
rs7102605	1.00[MEX][hapmap]
rs7123627	0.94[AFR][1000 genomes]
rs7127840	1.00[MEX][hapmap]
rs7929546	1.00[MEX][hapmap]
rs7934978	0.88[AFR][1000 genomes]
rs7941744	0.86[AFR][1000 genomes]
rs9633894	0.88[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8646200-8671000	Weak transcription	HUVEC	blood vessel
3	chr11:8650800-8676200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:8652200-8675000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:8654000-8673800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr11:8654200-8673800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:8654200-8675600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr11:8654400-8672400	Strong transcription	Brain Anterior Caudate	brain
9	chr11:8655000-8670200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:8655000-8676400	Strong transcription	Primary T cells from cord blood	blood
11	chr11:8655200-8672600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:8655400-8673400	Strong transcription	Dnd41	blood
13	chr11:8655600-8670600	Strong transcription	Adipose Nuclei	Adipose
14	chr11:8656000-8670600	Strong transcription	Fetal Muscle Leg	muscle
15	chr11:8656000-8672600	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:8656000-8672800	Strong transcription	Placenta	Placenta
17	chr11:8656600-8671600	Strong transcription	Brain Cingulate Gyrus	brain
18	chr11:8657200-8673800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:8657400-8672600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:8658000-8675200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:8658200-8672400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:8658200-8673800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:8658400-8671200	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:8658400-8671600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:8658600-8673000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:8658600-8674200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:8658600-8675000	Strong transcription	Liver	Liver
28	chr11:8659200-8670400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:8659200-8673600	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:8660200-8671000	Weak transcription	NHDF-Ad	bronchial
31	chr11:8660400-8670200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:8660800-8670800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:8661800-8673600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:8662400-8670200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr11:8662600-8680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:8662600-8692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:8662800-8671200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:8662800-8675400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:8663000-8671000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:8663000-8671000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:8663000-8680200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:8663200-8680000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:8663400-8670200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:8663600-8670400	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:8663600-8670400	Strong transcription	GM12878-XiMat	blood
46	chr11:8663600-8671400	Strong transcription	Fetal Intestine Large	intestine
47	chr11:8663600-8671600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:8663600-8676800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:8663800-8679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:8664200-8692800	Weak transcription	K562	blood

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