Variant report

Variant	rs10769934
Chromosome Location	chr11:8649497-8649498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8644859..8647194-chr11:8648029..8650090,2	K562	blood:
2	chr11:8645312..8647194-chr11:8647433..8649529,2	K562	blood:
3	chr11:8648527..8650476-chr11:8650942..8652919,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10734634	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10743083	0.91[ASN][1000 genomes]
rs10743085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769933	0.91[ASN][1000 genomes]
rs10769937	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840096	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042014	0.89[ASN][1000 genomes]
rs11042026	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11042028	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1128559	0.91[ASN][1000 genomes]
rs62622852	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123627	0.93[AFR][1000 genomes]
rs7934978	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7941744	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7950801	0.87[AFR][1000 genomes]
rs9633894	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
5	chr11:8630600-8653000	Weak transcription	Osteobl	bone
6	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
8	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:8634800-8657600	Weak transcription	Psoas Muscle	Psoas
11	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:8636600-8657000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:8637000-8661600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
16	chr11:8637400-8659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:8637800-8657800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:8638400-8657400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:8639600-8661000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:8639800-8659800	Weak transcription	K562	blood
21	chr11:8641400-8661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:8641800-8666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:8642600-8650400	Weak transcription	HMEC	breast
24	chr11:8642600-8650600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:8643200-8652600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:8643400-8658800	Weak transcription	HSMMtube	muscle
27	chr11:8643800-8659200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:8644800-8663400	Weak transcription	Fetal Lung	lung
29	chr11:8644800-8667000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:8645600-8651000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:8645600-8652600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:8645800-8655000	Weak transcription	Fetal Thymus	thymus
33	chr11:8646000-8655000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:8646000-8661600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:8646200-8652800	Weak transcription	NH-A	brain
36	chr11:8646200-8653000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:8646200-8656200	Weak transcription	A549	lung
38	chr11:8646200-8671000	Weak transcription	HUVEC	blood vessel
39	chr11:8646400-8651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:8646400-8652800	Weak transcription	NHDF-Ad	bronchial
41	chr11:8646400-8656000	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:8646400-8666400	Weak transcription	HSMM	muscle
43	chr11:8646600-8650600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:8646600-8652400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:8646600-8652600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:8646600-8652600	Weak transcription	NHLF	lung
47	chr11:8646600-8652800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:8646600-8653200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:8646600-8654600	Weak transcription	GM12878-XiMat	blood
50	chr11:8646600-8655600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links