Variant report

Variant	rs62622852
Chromosome Location	chr11:8639331-8639332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8638144..8640274-chr11:8696302..8699233,2	K562	blood:
2	chr11:8638813..8643565-chr11:8702244..8705036,4	K562	blood:
3	chr11:8639153..8644664-chr11:8708674..8711558,4	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10734634	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10743083	1.00[ASN][1000 genomes]
rs10743085	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769933	1.00[ASN][1000 genomes]
rs10769934	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769937	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840096	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042014	0.98[ASN][1000 genomes]
rs11042026	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042028	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1128559	1.00[ASN][1000 genomes]
rs12224243	0.85[AMR][1000 genomes]
rs7934978	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7941744	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9633894	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:8626400-8643400	Weak transcription	Fetal Lung	lung
5	chr11:8626600-8639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
7	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
8	chr11:8627800-8642400	Weak transcription	A549	lung
9	chr11:8630200-8642400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:8630600-8653000	Weak transcription	Osteobl	bone
11	chr11:8630800-8645400	Weak transcription	NHLF	lung
12	chr11:8630800-8645600	Weak transcription	NH-A	brain
13	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
14	chr11:8631000-8644000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:8632000-8641600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:8632400-8644800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:8632600-8644600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:8632800-8643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:8632800-8644200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
22	chr11:8633000-8640000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:8633000-8641600	Weak transcription	Fetal Heart	heart
24	chr11:8633000-8642200	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:8634000-8646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:8634200-8647200	Strong transcription	Liver	Liver
27	chr11:8634600-8642400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:8634600-8644000	Weak transcription	Brain Substantia Nigra	brain
29	chr11:8634600-8645600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:8634800-8644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:8634800-8657600	Weak transcription	Psoas Muscle	Psoas
34	chr11:8635200-8642800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:8635200-8645400	Weak transcription	HUVEC	blood vessel
36	chr11:8635400-8644000	Weak transcription	HSMM	muscle
37	chr11:8635400-8646800	Weak transcription	Fetal Brain Male	brain
38	chr11:8635400-8647000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:8635600-8647000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:8635800-8642200	Weak transcription	HSMMtube	muscle
42	chr11:8635800-8644600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:8636000-8640200	Weak transcription	Right Ventricle	heart
44	chr11:8636000-8643600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:8636200-8646400	Weak transcription	Fetal Brain Female	brain
46	chr11:8636200-8646600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:8636600-8641000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:8636600-8657000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:8636800-8643200	Strong transcription	Primary B cells from cord blood	blood

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