Variant report

Variant	rs7941744
Chromosome Location	chr11:8647171-8647172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8644589..8647498-chr11:8659025..8660844,2	MCF-7	breast:
2	chr11:8644859..8647194-chr11:8648029..8650090,2	K562	blood:
3	chr11:8641168..8642878-chr11:8644731..8647505,2	K562	blood:
4	chr11:8645853..8647429-chr11:8659220..8661284,2	K562	blood:
5	chr11:8645312..8647194-chr11:8647433..8649529,2	K562	blood:
6	chr11:8645853..8648717-chr11:8659784..8661524,2	K562	blood:
7	chr11:8524893..8527404-chr11:8645934..8647701,2	K562	blood:

Variant related genes	Relation type
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10734634	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10743083	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10743085	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769933	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10769934	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769937	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042014	0.93[ASN][1000 genomes]
rs11042026	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042028	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1128559	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62622852	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123627	0.82[AFR][1000 genomes]
rs7934978	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950801	0.86[AFR][1000 genomes]
rs9633894	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
5	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
6	chr11:8630600-8653000	Weak transcription	Osteobl	bone
7	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
9	chr11:8634200-8647200	Strong transcription	Liver	Liver
10	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:8634800-8657600	Weak transcription	Psoas Muscle	Psoas
13	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:8636600-8657000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:8636800-8647200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr11:8636800-8647400	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:8637000-8647200	Strong transcription	Fetal Intestine Small	intestine
19	chr11:8637000-8661600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
21	chr11:8637200-8647200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:8637200-8647200	Strong transcription	Aorta	Aorta
23	chr11:8637200-8647200	Strong transcription	Pancreas	Pancrea
24	chr11:8637200-8647200	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:8637200-8647200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:8637200-8647400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:8637200-8647600	Strong transcription	Primary T cells from cord blood	blood
28	chr11:8637200-8647600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:8637200-8648200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:8637200-8648800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:8637400-8647600	Strong transcription	Adipose Nuclei	Adipose
32	chr11:8637400-8659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:8637600-8647400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:8637600-8647400	Strong transcription	Fetal Stomach	stomach
35	chr11:8637800-8647400	Strong transcription	Thymus	Thymus
36	chr11:8637800-8657800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:8638000-8647200	Strong transcription	Gastric	stomach
38	chr11:8638400-8647200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:8638400-8657400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:8639600-8647400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:8639600-8661000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:8639800-8659800	Weak transcription	K562	blood
43	chr11:8640000-8647200	Strong transcription	Esophagus	oesophagus
44	chr11:8640200-8647200	Strong transcription	Ovary	ovary
45	chr11:8641400-8661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:8641600-8647200	Strong transcription	Brain Angular Gyrus	brain
47	chr11:8641800-8647400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:8641800-8647600	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:8641800-8666200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:8642600-8650400	Weak transcription	HMEC	breast

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