Variant report

Variant	rs1128559
Chromosome Location	chr11:8637191-8637192
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8635996..8638733-chr11:8639792..8642248,2	K562	blood:

Variant related genes	Relation type
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10734634	0.99[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10743083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743085	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs10769933	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769934	0.91[ASN][1000 genomes]
rs10769937	0.96[ASN][1000 genomes]
rs10840096	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11042014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11042026	0.91[ASN][1000 genomes]
rs11042028	0.86[ASN][1000 genomes]
rs62622852	1.00[ASN][1000 genomes]
rs7934978	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7941744	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7950801	0.84[YRI][hapmap]
rs9633894	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8637200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:8626200-8637200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:8626400-8637200	Weak transcription	Pancreas	Pancrea
7	chr11:8626400-8637400	Weak transcription	Adipose Nuclei	Adipose
8	chr11:8626400-8638400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:8626400-8638400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:8626400-8643400	Weak transcription	Fetal Lung	lung
11	chr11:8626600-8637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:8626600-8639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
14	chr11:8626800-8637200	Weak transcription	Esophagus	oesophagus
15	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
16	chr11:8627600-8637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:8627800-8637200	Weak transcription	NHEK	skin
18	chr11:8627800-8642400	Weak transcription	A549	lung
19	chr11:8628800-8637200	Weak transcription	Primary T cells from cord blood	blood
20	chr11:8629200-8638000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:8630200-8642400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:8630600-8653000	Weak transcription	Osteobl	bone
23	chr11:8630800-8637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:8630800-8638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:8630800-8638400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:8630800-8645400	Weak transcription	NHLF	lung
27	chr11:8630800-8645600	Weak transcription	NH-A	brain
28	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
29	chr11:8631000-8637200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:8631000-8644000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:8632000-8637200	Weak transcription	Brain Anterior Caudate	brain
32	chr11:8632000-8637600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:8632000-8641600	Weak transcription	Brain Angular Gyrus	brain
34	chr11:8632200-8637200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr11:8632200-8639000	Weak transcription	Fetal Thymus	thymus
36	chr11:8632400-8644800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:8632600-8637800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:8632600-8638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:8632600-8644600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:8632800-8637200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:8632800-8643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:8632800-8644200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
45	chr11:8633000-8637400	Weak transcription	HepG2	liver
46	chr11:8633000-8638200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:8633000-8640000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:8633000-8641600	Weak transcription	Fetal Heart	heart
49	chr11:8633000-8642200	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:8634000-8646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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