Variant report

Variant	rs7102605
Chromosome Location	chr11:8551677-8551678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10437594	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10437663	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10743077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769912	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840048	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840053	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840073	1.00[ASN][1000 genomes]
rs10840074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840075	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840076	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840078	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840082	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041909	1.00[CEU][hapmap]
rs11041921	1.00[CEU][hapmap]
rs11041922	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041928	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041942	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs11041946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11041961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041983	1.00[CEU][hapmap]
rs11041984	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041992	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042001	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042005	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042009	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042010	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs11512437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517716	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12281197	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12281285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12282087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282398	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[ASN][1000 genomes]
rs12283443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12292871	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs12361165	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12362755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12364516	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12364713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12365973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418525	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12422205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34381273	0.93[ASN][1000 genomes]
rs4450173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58364522	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59084068	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7108120	0.90[ASN][1000 genomes]
rs7108379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726008	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403636	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs7941120	0.81[ASN][1000 genomes]
rs7950801	1.00[MEX][hapmap]
rs9737172	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7102605	PRG4	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8549000-8553000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8551000-8555200	Enhancers	Fetal Heart	heart
3	chr11:8551000-8555800	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:8551400-8551800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:8551600-8551800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:8551600-8551800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:8551600-8555000	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links