Variant report

Variant	rs12362755
Chromosome Location	chr11:8640896-8640897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8639960..8642572-chr11:8643233..8645005,2	K562	blood:
2	chr11:8638813..8643565-chr11:8702244..8705036,4	K562	blood:
3	chr11:8639153..8644664-chr11:8708674..8711558,4	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction
ENSG00000166436	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10437594	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10437663	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10743077	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769909	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769913	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10840048	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs10840049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs10840054	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840068	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840073	0.82[ASN][1000 genomes]
rs10840074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10840075	0.87[EUR][1000 genomes]
rs10840076	0.87[EUR][1000 genomes]
rs10840078	0.87[EUR][1000 genomes]
rs10840082	0.87[EUR][1000 genomes]
rs10840086	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041921	1.00[CEU][hapmap]
rs11041922	0.87[EUR][1000 genomes]
rs11041923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11041928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11041936	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041937	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11041942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11041946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041956	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041957	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041959	0.82[ASN][1000 genomes]
rs11041961	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041983	1.00[CEU][hapmap]
rs11041984	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11041987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11041988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11041989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11041992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11042001	0.87[EUR][1000 genomes]
rs11042005	1.00[EUR][1000 genomes]
rs11042009	1.00[EUR][1000 genomes]
rs11042010	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042081	1.00[AMR][1000 genomes]
rs11512437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11517716	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12226180	1.00[AMR][1000 genomes]
rs12276661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12281197	0.87[EUR][1000 genomes]
rs12281285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12282087	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12282398	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12283443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12289533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12292871	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap]
rs12361165	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12364516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12364713	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12365973	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12418359	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12418525	0.82[ASN][1000 genomes]
rs12419725	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12422205	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12573963	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12575045	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1867812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2100066	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4450173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4627069	0.87[EUR][1000 genomes]
rs58353604	1.00[AMR][1000 genomes]
rs58364522	0.82[ASN][1000 genomes]
rs59084068	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7102605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7108379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7127840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs726008	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs73403636	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73408023	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73408025	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7929546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:8626400-8643400	Weak transcription	Fetal Lung	lung
5	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
6	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
7	chr11:8627800-8642400	Weak transcription	A549	lung
8	chr11:8630200-8642400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:8630600-8653000	Weak transcription	Osteobl	bone
10	chr11:8630800-8645400	Weak transcription	NHLF	lung
11	chr11:8630800-8645600	Weak transcription	NH-A	brain
12	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
13	chr11:8631000-8644000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:8632000-8641600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:8632400-8644800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:8632600-8644600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:8632800-8643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:8632800-8644200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:8632800-8659000	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:8632800-8663800	Weak transcription	Fetal Kidney	kidney
21	chr11:8633000-8641600	Weak transcription	Fetal Heart	heart
22	chr11:8633000-8642200	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:8634000-8646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:8634200-8647200	Strong transcription	Liver	Liver
25	chr11:8634600-8642400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:8634600-8644000	Weak transcription	Brain Substantia Nigra	brain
27	chr11:8634600-8645600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:8634600-8661600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:8634600-8661800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:8634800-8644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:8634800-8657600	Weak transcription	Psoas Muscle	Psoas
32	chr11:8635200-8642800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:8635200-8645400	Weak transcription	HUVEC	blood vessel
34	chr11:8635400-8644000	Weak transcription	HSMM	muscle
35	chr11:8635400-8646800	Weak transcription	Fetal Brain Male	brain
36	chr11:8635400-8647000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:8635400-8661400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:8635600-8647000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:8635800-8642200	Weak transcription	HSMMtube	muscle
40	chr11:8635800-8644600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:8636000-8643600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:8636200-8646400	Weak transcription	Fetal Brain Female	brain
43	chr11:8636200-8646600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:8636200-8661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:8636600-8641000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr11:8636600-8657000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:8636800-8643200	Strong transcription	Primary B cells from cord blood	blood
48	chr11:8636800-8647000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:8636800-8647200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:8636800-8647400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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