Variant report

Variant	rs58353604
Chromosome Location	chr11:8634408-8634409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8626986..8629942-chr11:8631713..8635066,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STK33-1	chr11:8633589-8635083	NONHSAT017852

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10840046	1.00[AMR][1000 genomes]
rs11041936	1.00[AMR][1000 genomes]
rs11041937	1.00[AMR][1000 genomes]
rs11041957	1.00[AMR][1000 genomes]
rs11041961	1.00[AMR][1000 genomes]
rs11041984	1.00[AMR][1000 genomes]
rs11041988	1.00[AMR][1000 genomes]
rs11042027	1.00[AMR][1000 genomes]
rs11042081	1.00[AMR][1000 genomes]
rs11512437	1.00[AMR][1000 genomes]
rs12226180	1.00[AMR][1000 genomes]
rs12362755	1.00[AMR][1000 genomes]
rs12364516	1.00[AMR][1000 genomes]
rs12365973	1.00[AMR][1000 genomes]
rs12422205	1.00[AMR][1000 genomes]
rs59084068	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8626000-8637000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:8626000-8637200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:8626000-8661600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:8626000-8661800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:8626200-8637200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:8626200-8653000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:8626400-8636000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:8626400-8636200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:8626400-8636800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:8626400-8637200	Weak transcription	Pancreas	Pancrea
11	chr11:8626400-8637400	Weak transcription	Adipose Nuclei	Adipose
12	chr11:8626400-8638400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:8626400-8638400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:8626400-8643400	Weak transcription	Fetal Lung	lung
15	chr11:8626600-8637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:8626600-8639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:8626600-8648800	Weak transcription	Stomach Mucosa	stomach
18	chr11:8626800-8637000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:8626800-8637200	Weak transcription	Esophagus	oesophagus
20	chr11:8626800-8659600	Weak transcription	Hela-S3	cervix
21	chr11:8627600-8637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:8627800-8637000	Weak transcription	HMEC	breast
23	chr11:8627800-8637200	Weak transcription	NHEK	skin
24	chr11:8627800-8642400	Weak transcription	A549	lung
25	chr11:8628000-8635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:8628000-8637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:8628800-8637200	Weak transcription	Primary T cells from cord blood	blood
28	chr11:8629200-8638000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:8629400-8635200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:8630200-8642400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:8630600-8635600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:8630600-8653000	Weak transcription	Osteobl	bone
33	chr11:8630800-8637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:8630800-8638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:8630800-8638400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:8630800-8645400	Weak transcription	NHLF	lung
37	chr11:8630800-8645600	Weak transcription	NH-A	brain
38	chr11:8630800-8645800	Weak transcription	NHDF-Ad	bronchial
39	chr11:8631000-8637200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:8631000-8644000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:8631400-8636800	Weak transcription	Primary B cells from cord blood	blood
42	chr11:8631800-8635200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:8632000-8637200	Weak transcription	Brain Anterior Caudate	brain
44	chr11:8632000-8637600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:8632000-8641600	Weak transcription	Brain Angular Gyrus	brain
46	chr11:8632200-8636000	Weak transcription	Fetal Brain Female	brain
47	chr11:8632200-8637200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:8632200-8639000	Weak transcription	Fetal Thymus	thymus
49	chr11:8632400-8644800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:8632600-8635400	Weak transcription	Fetal Stomach	stomach

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