Variant report

Variant	rs11041948
Chromosome Location	chr11:8508475-8508476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10437594	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10437663	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10743077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840053	1.00[CHB][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840069	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840073	1.00[ASN][1000 genomes]
rs10840074	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840075	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840076	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840078	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840082	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840088	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041922	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041923	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041945	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11041956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041959	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11041961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11041984	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041987	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041988	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042001	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042005	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042009	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042010	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042027	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs11512437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11517715	0.87[YRI][hapmap]
rs11517716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12281197	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12281285	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs12282087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12283443	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs12292871	0.89[JPT][hapmap]
rs12295855	0.82[YRI][hapmap]
rs12361165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12362755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12364516	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12364713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12365973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418525	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419725	1.00[EUR][1000 genomes]
rs12422205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100066	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166470	0.82[YRI][hapmap]
rs34381273	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4450173	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58364522	1.00[ASN][1000 genomes]
rs59084068	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7102605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108120	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7108379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726008	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403636	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931834	0.82[YRI][hapmap]
rs7941120	0.81[ASN][1000 genomes]
rs9737172	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links