Variant report

Variant	rs11517715
Chromosome Location	chr11:8511888-8511889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1026021	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs10500703	0.81[CEU][hapmap]
rs10743073	0.94[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs10840057	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10840059	0.96[YRI][hapmap]
rs11041928	0.81[YRI][hapmap]
rs11041942	0.81[YRI][hapmap]
rs11041945	0.96[YRI][hapmap]
rs11041948	0.87[YRI][hapmap]
rs11517716	0.84[AFR][1000 genomes]
rs12276661	0.89[YRI][hapmap]
rs12281285	0.86[YRI][hapmap]
rs12282398	0.81[YRI][hapmap]
rs12295855	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577287	0.91[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12787407	0.90[EUR][1000 genomes]
rs12791925	0.90[EUR][1000 genomes]
rs12808779	0.81[CEU][hapmap]
rs16938253	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1867810	0.94[CEU][hapmap];0.80[JPT][hapmap];0.90[YRI][hapmap]
rs1867812	0.90[YRI][hapmap]
rs2100067	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2166470	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2311392	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34009921	0.81[EUR][1000 genomes]
rs34059271	0.90[EUR][1000 genomes]
rs34413282	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34413622	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35091649	0.91[EUR][1000 genomes]
rs35807094	0.89[EUR][1000 genomes]
rs57757082	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67191473	0.91[EUR][1000 genomes]
rs7127840	0.96[YRI][hapmap]
rs71474991	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72855149	0.83[EUR][1000 genomes]
rs7924477	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929546	0.96[YRI][hapmap]
rs7931834	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952429	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11517715	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8510600-8512200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr11:8511000-8512600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:8511400-8512000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr11:8511600-8512000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8511600-8512200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:8511600-8512400	Weak transcription	Stomach Smooth Muscle	stomach

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