Variant report
| Variant | rs57757082 |
|---|---|
| Chromosome Location | chr11:8528653-8528654 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1026021 | 0.90[EUR][1000 genomes] |
| rs10840057 | 0.89[EUR][1000 genomes] |
| rs11517715 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12295855 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12787407 | 0.90[EUR][1000 genomes] |
| rs12791925 | 0.90[EUR][1000 genomes] |
| rs16938253 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2100067 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2311392 | 0.90[EUR][1000 genomes] |
| rs34009921 | 0.81[EUR][1000 genomes] |
| rs34059271 | 0.90[EUR][1000 genomes] |
| rs34413282 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34413622 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35091649 | 0.91[EUR][1000 genomes] |
| rs35807094 | 0.89[EUR][1000 genomes] |
| rs67191473 | 0.91[EUR][1000 genomes] |
| rs71474991 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72855149 | 0.83[EUR][1000 genomes] |
| rs7924477 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7931834 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7952429 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751035 | chr11:8431654-8685451 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv32551 | chr11:8457023-8534642 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv896983 | chr11:8526643-8682465 | ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs57757082 | TRIM66 | cis | Whole Blood | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:8527800-8528800 | Bivalent Enhancer | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr11:8528600-8529000 | Enhancers | Stomach Mucosa | stomach |
