Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1026021	0.92[EUR][1000 genomes]
rs10840057	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11041956	0.83[AFR][1000 genomes]
rs11517715	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12295855	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12787407	0.90[EUR][1000 genomes]
rs12791925	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12808779	0.80[EUR][1000 genomes]
rs16938253	0.90[EUR][1000 genomes]
rs2100066	0.83[AFR][1000 genomes]
rs2100067	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2311392	0.92[EUR][1000 genomes]
rs34009921	0.82[EUR][1000 genomes]
rs34059271	0.91[EUR][1000 genomes]
rs34413282	0.93[EUR][1000 genomes]
rs34413622	0.93[EUR][1000 genomes]
rs35091649	0.91[EUR][1000 genomes]
rs35807094	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57757082	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67191473	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71474991	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72855149	0.85[EUR][1000 genomes]
rs7931834	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7952429	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7924477	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8537600-8538800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:8538000-8538600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8538000-8538800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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