Variant report

Variant	rs1867810
Chromosome Location	chr11:8505528-8505529
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1026021	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10500703	0.88[CEU][hapmap]
rs10743073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs10769909	0.81[AFR][1000 genomes]
rs10769936	0.84[CEU][hapmap]
rs10769938	0.84[CEU][hapmap]
rs10840054	0.81[AFR][1000 genomes]
rs10840057	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840059	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs11041942	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs11041945	1.00[YRI][hapmap]
rs11042025	0.84[CEU][hapmap]
rs11517715	0.94[CEU][hapmap];0.80[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12276661	0.93[YRI][hapmap]
rs12295855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12577287	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs12787407	0.87[EUR][1000 genomes]
rs12791925	0.87[EUR][1000 genomes]
rs12808779	0.88[CEU][hapmap]
rs1502317	0.85[CEU][hapmap]
rs16938253	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1867812	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2100067	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2166470	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs2311392	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs34059271	0.88[EUR][1000 genomes]
rs34413282	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34413622	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35091649	0.88[EUR][1000 genomes]
rs35807094	0.87[EUR][1000 genomes]
rs4291677	0.84[CEU][hapmap]
rs57757082	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67191473	0.88[EUR][1000 genomes]
rs7127840	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs71474991	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72855149	0.81[EUR][1000 genomes]
rs7924477	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929546	1.00[YRI][hapmap]
rs7931834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7952429	0.91[EUR][1000 genomes]
rs885114	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1867810	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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