Variant report

Variant	rs10840058
Chromosome Location	chr11:8498399-8498400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:8498357-8498407	H1-hESC	embryonic stem cell:	embryo
2	chr11:8498357-8498407	SK-N-SH_RA	brain:	n/a
3	chr11:8498357-8498407	AG04450	lung:	fetal
4	chr11:8498357-8498407	NT2-D1	testis:	n/a
5	chr11:8498357-8498407	IMR90	lung:	fetal
6	chr11:8498357-8498407	HRPEpiC	eye:	n/a
7	chr11:8498357-8498407	HCM	heart:	n/a
8	chr11:8498357-8498407	HCF	heart:	n/a
9	chr11:8498357-8498407	K562	blood:	n/a
10	chr11:8498357-8498407	HEK293	kidney:	embryo
11	chr11:8498357-8498407	A549	lung:	n/a
12	chr11:8498357-8498407	PFSK-1	brain:	n/a
13	chr11:8498357-8498407	RPTEC	kidney:	n/a
14	chr11:8498357-8498407	MCF10A-Er-Src	breast:	n/a
15	chr11:8498357-8498407	SK-N-MC	brain:	n/a
16	chr11:8498357-8498407	HUVEC	blood vessel:	n/a
17	chr11:8498357-8498407	AoSMC	blood vessel:	n/a
18	chr11:8498357-8498407	NB4	blood:	n/a
19	chr11:8498357-8498407	CMK	blood:	n/a
20	chr11:8498357-8498407	HepG2	liver:	n/a
21	chr11:8498357-8498407	LNCaP	prostate:	n/a
22	chr11:8498357-8498407	Hepatocyte	liver:	n/a
23	chr11:8498357-8498407	NH-A	brain:	n/a
24	chr11:8498357-8498407	HCPEpiC	choroid plexus:	n/a
25	chr11:8498357-8498407	HL-60	blood:	n/a
26	chr11:8498357-8498407	HAEpiC	amniotic membrane:	n/a
27	chr11:8498357-8498407	PANC-1	pancreas:	n/a
28	chr11:8498357-8498407	Jurkat	blood:	n/a
29	chr11:8498357-8498407	HCT-116	colon:	n/a
30	chr11:8498357-8498407	HRE	kidney:	n/a
31	chr11:8498357-8498407	HIPEpiC	eye:	n/a
32	chr11:8498357-8498407	NHBE	bronchial:	n/a
33	chr11:8498357-8498407	GM12878	blood:	n/a
34	chr11:8498357-8498407	SAEC	small airway:	n/a
35	chr11:8498357-8498407	PrEC	prostate:	n/a
36	chr11:8498357-8498407	AG04449	skin:	fetal
37	chr11:8498357-8498407	GM12892	blood:	n/a
38	chr11:8498357-8498407	ProgFib	skin:	n/a
39	chr11:8498357-8498407	NHDF-neo	bronchial:	n/a
40	chr11:8498357-8498407	HPAEpiC	pulmonary alveolar:	n/a
41	chr11:8498357-8498407	ovcar-3	ovarian:	n/a
42	chr11:8498357-8498407	T-47D	breast:	n/a
43	chr11:8498357-8498407	U87	brain:	n/a
44	chr11:8498357-8498407	HRCEpiC	kidney:	n/a
45	chr11:8498357-8498407	BE2_C	brain:	n/a
46	chr11:8498357-8498407	HMEC	breast:	n/a
47	chr11:8498357-8498407	MCF-7	breast:	n/a
48	chr11:8498357-8498407	BJ	skin:	n/a
49	chr11:8498357-8498407	GM12891	blood:	n/a
50	chr11:8498357-8498407	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
STK33	CpG island

Extended variants
information (count: 98 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10160430	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10160805	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10743072	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743074	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10743081	0.80[EUR][1000 genomes]
rs10769907	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769908	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769915	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769916	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769918	0.88[EUR][1000 genomes]
rs10769921	0.84[EUR][1000 genomes]
rs10769922	0.84[EUR][1000 genomes]
rs10769924	0.87[EUR][1000 genomes]
rs10769925	0.84[EUR][1000 genomes]
rs10769926	0.84[EUR][1000 genomes]
rs10840047	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840050	0.82[ASN][1000 genomes]
rs10840051	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840055	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840056	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840060	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840065	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840072	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840077	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840080	0.89[EUR][1000 genomes]
rs10840083	0.88[EUR][1000 genomes]
rs10840084	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840085	0.88[EUR][1000 genomes]
rs10840087	0.88[EUR][1000 genomes]
rs10840091	0.81[EUR][1000 genomes]
rs11041924	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11041962	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041974	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11041983	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11041985	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11041986	0.85[ASN][1000 genomes]
rs11041990	0.89[EUR][1000 genomes]
rs11041993	0.89[EUR][1000 genomes]
rs11041994	0.89[EUR][1000 genomes]
rs11041995	0.89[EUR][1000 genomes]
rs11041997	0.88[EUR][1000 genomes]
rs11041999	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042002	0.88[EUR][1000 genomes]
rs11493772	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576736	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374262	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1446462	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1446463	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1446464	0.82[ASN][1000 genomes]
rs1900272	0.92[ASN][1000 genomes]
rs1900273	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2015629	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2044463	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2289921	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2289923	0.82[ASN][1000 genomes]
rs2871753	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3969875	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4244804	0.85[EUR][1000 genomes]
rs4418812	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4475924	0.85[EUR][1000 genomes]
rs4612809	0.85[EUR][1000 genomes]
rs4620720	0.85[EUR][1000 genomes]
rs4758067	0.80[ASN][1000 genomes]
rs4929942	0.87[EUR][1000 genomes]
rs4929943	0.84[EUR][1000 genomes]
rs4929944	0.84[EUR][1000 genomes]
rs4929945	0.84[EUR][1000 genomes]
rs4929949	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6484485	0.84[EUR][1000 genomes]
rs6578968	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6578969	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7101471	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108993	0.81[EUR][1000 genomes]
rs7112153	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118189	0.81[EUR][1000 genomes]
rs7120065	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126013	0.82[ASN][1000 genomes]
rs7127684	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7128727	0.81[EUR][1000 genomes]
rs7129564	0.81[EUR][1000 genomes]
rs7924753	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931604	0.81[ASN][1000 genomes]
rs7934396	0.86[EUR][1000 genomes]
rs7935708	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7947670	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7949017	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950870	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9300090	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9300091	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs935370	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9705083	0.89[EUR][1000 genomes]
rs9705253	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9736791	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9737312	0.89[EUR][1000 genomes]
rs9737401	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10840058	STK33	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8492200-8499400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:8498000-8498800	Enhancers	GM12878-XiMat	blood

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