Variant report

Variant	rs10160430
Chromosome Location	chr11:8599876-8599877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10160804	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10160805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10444244	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10444316	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10743072	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10743074	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10743076	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10743078	0.82[ASN][1000 genomes]
rs10743079	0.82[ASN][1000 genomes]
rs10743080	0.82[AMR][1000 genomes]
rs10743081	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10743082	0.80[CEU][hapmap]
rs10769905	0.84[CEU][hapmap]
rs10769907	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10769908	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769910	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10769915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769918	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10769921	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769922	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769923	0.83[AMR][1000 genomes]
rs10769924	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769925	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769926	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10769927	0.91[AMR][1000 genomes]
rs10769929	0.85[ASN][1000 genomes]
rs10840047	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840051	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840055	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840056	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840058	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840060	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10840063	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10840065	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840072	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840080	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840083	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840084	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840085	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840087	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840089	0.82[AMR][1000 genomes]
rs10840091	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10840103	0.84[CEU][hapmap]
rs11041924	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041929	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs11041950	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11041962	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11041974	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041978	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11041983	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11041985	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11041986	0.99[ASN][1000 genomes]
rs11041990	0.96[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041993	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11041994	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041995	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11041997	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11041999	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042002	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11493772	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12277932	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12576736	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12806736	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs1374262	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1446462	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1446463	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1446464	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs1900272	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1900273	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2015629	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028882	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2044463	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289921	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2289923	0.80[CEU][hapmap]
rs2311391	0.84[CEU][hapmap]
rs2871753	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3969875	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4131072	0.81[CEU][hapmap];0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs4244804	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4244806	0.81[ASN][1000 genomes]
rs4418812	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4475924	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4612809	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4620720	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4758067	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs4929941	0.80[CEU][hapmap];0.83[AMR][1000 genomes]
rs4929942	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4929943	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4929944	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929945	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4929949	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4929950	0.80[CEU][hapmap];0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs6484485	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6578968	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578969	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7101471	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7108993	0.84[CEU][hapmap]
rs7112153	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7120065	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7126013	0.81[CHB][hapmap]
rs7126934	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs7127684	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs725502	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs726007	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs749263	0.85[CEU][hapmap]
rs7924753	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7929120	0.83[CEU][hapmap]
rs7931604	0.80[CEU][hapmap]
rs7934396	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7935708	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7939731	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7945659	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7947670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7949017	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7950870	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9284150	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs9284151	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs9300089	0.81[ASN][1000 genomes]
rs9300090	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9300091	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9300092	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9300093	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9300094	0.82[ASN][1000 genomes]
rs935370	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs9705083	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9705253	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9736791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9737312	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9737401	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10160430	STK33	cis	Artery Tibial	GTEx
rs10160430	C11orf17	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8595800-8606000	Weak transcription	Left Ventricle	heart
2	chr11:8599800-8605000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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